Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_L04
         (906 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q53M44 Cluster: At2g43970/F6E13.10; n=5; Oryza sativa|R...    34   5.7  
UniRef50_Q5C3I4 Cluster: SJCHGC03138 protein; n=2; Schistosoma j...    33   7.6  

>UniRef50_Q53M44 Cluster: At2g43970/F6E13.10; n=5; Oryza sativa|Rep:
           At2g43970/F6E13.10 - Oryza sativa subsp. japonica (Rice)
          Length = 505

 Score = 33.9 bits (74), Expect = 5.7
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +2

Query: 470 PPPXGXGXFLXXPPPXPPXKXXXPXXXGGGG 562
           PPP     F   PPP PP     P   GGGG
Sbjct: 67  PPPPPAAFFAAVPPPPPPPFEYYPAVGGGGG 97


>UniRef50_Q5C3I4 Cluster: SJCHGC03138 protein; n=2; Schistosoma
           japonicum|Rep: SJCHGC03138 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 156

 Score = 33.5 bits (73), Expect = 7.6
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -1

Query: 309 FFXGXXPPXXXFFFFXGAXXPPXXGXPPP 223
           FF G  PP   FFF      PP  G PPP
Sbjct: 29  FFYGAPPPPPPFFFNKKKRPPPPPGGPPP 57


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 396,712,801
Number of Sequences: 1657284
Number of extensions: 5200483
Number of successful extensions: 13641
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10813
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 82391630811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)