Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_L04
(906 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794... 34 0.18
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336... 30 2.9
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 3.8
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 29 5.1
04_02_0020 - 8610425-8610710,8610716-8611140,8611393-8611463,861... 29 5.1
08_01_0888 + 8719416-8719720,8719747-8720482 29 6.7
05_03_0313 + 12200743-12200955,12201238-12201622,12201997-122022... 29 6.7
08_02_0154 - 13324384-13325351,13326306-13326502,13326695-133272... 28 8.9
08_02_0151 - 13287964-13288661,13289616-13289812,13290005-132905... 28 8.9
08_02_0146 - 13195691-13196658,13197613-13197809,13198002-131984... 28 8.9
>11_02_0065 -
7938007-7938393,7939292-7939435,7940597-7940665,
7940762-7940809,7941488-7941584,7941688-7941767,
7941841-7941912,7942256-7942350,7943903-7943984,
7945176-7945209,7945255-7945262,7945657-7946058
Length = 505
Score = 33.9 bits (74), Expect = 0.18
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +2
Query: 470 PPPXGXGXFLXXPPPXPPXKXXXPXXXGGGG 562
PPP F PPP PP P GGGG
Sbjct: 67 PPPPPAAFFAAVPPPPPPPFEYYPAVGGGGG 97
>06_01_0474 -
3362734-3362827,3363179-3363366,3363458-3363700,
3363820-3364098,3364189-3364386,3364475-3365110,
3365209-3365463,3365579-3365685,3365770-3369566,
3369677-3370166,3370918-3371308,3371481-3371573,
3371687-3371810,3372544-3372791
Length = 2380
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +2
Query: 470 PPPXGXGXFLXXPPPXPPXKXXXPXXXGGG 559
PPP G G PPP PP P GGG
Sbjct: 5 PPPPGTGA----PPPPPPAAVGPPGGVGGG 30
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +3
Query: 768 PPXNXKKXGXSPQKNPPGAPFLXXRXKKKKXPPXPPXXXGXFLXPP 905
PP SP PP P L R PP PP L PP
Sbjct: 591 PPPLPNCLVPSPPPPPPPPPILPNRSVPPPPPPPPPLPNHSVLPPP 636
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -1
Query: 561 PPPPXXXGXXFFXGGXGGGXXKKXPXPXGGG 469
P PP G GG GGG + P GGG
Sbjct: 82 PSPPFPSGNTRGGGGGGGGSSMQQQQPGGGG 112
>04_02_0020 -
8610425-8610710,8610716-8611140,8611393-8611463,
8611503-8611878
Length = 385
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Frame = +3
Query: 768 PPXNXKKXGXSPQKNPPGA--PFLXXRXKKKKXPPXPPXXXG 887
PP KK QK PP A P R K K P PP G
Sbjct: 340 PPIPAKKLEQPAQKKPPSAPKPRKVWREKPKTPAPAPPETGG 381
>08_01_0888 + 8719416-8719720,8719747-8720482
Length = 346
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Frame = +3
Query: 768 PPXNXKKXGXSPQKNPPGA--PFLXXRXKKKKXPPXPPXXXG 887
PP KK QK PP A P R K K P PP G
Sbjct: 301 PPIPAKKLEQLAQKKPPSAPKPKKVWREKPKTPAPSPPETGG 342
>05_03_0313 +
12200743-12200955,12201238-12201622,12201997-12202274,
12202359-12202976
Length = 497
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Frame = +3
Query: 768 PPXNXKKXGXSPQKNPPGA--PFLXXRXKKKKXPPXPPXXXG 887
PP KK QK PP A P R K K P PP G
Sbjct: 452 PPILAKKLEQPAQKKPPSAPKPKKVWRKKPKTPTPSPPETGG 493
>08_02_0154 -
13324384-13325351,13326306-13326502,13326695-13327274,
13328324-13328446,13328803-13329130
Length = 731
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = +3
Query: 768 PPXNXKKXGXSPQKNPPGA--PFLXXRXKKKKXPPXPP 875
PP KK QK PP A P R K K P PP
Sbjct: 360 PPIRAKKLEQLAQKKPPSAPKPKKVWREKPKTPAPSPP 397
>08_02_0151 -
13287964-13288661,13289616-13289812,13290005-13290523,
13290912-13291114
Length = 538
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = +3
Query: 768 PPXNXKKXGXSPQKNPPGA--PFLXXRXKKKKXPPXPP 875
PP KK QK PP A P R K K P PP
Sbjct: 257 PPIRAKKLEQLAQKKPPSAPKPKKVWREKPKTPAPSPP 294
>08_02_0146 -
13195691-13196658,13197613-13197809,13198002-13198479,
13199660-13199782,13200139-13200466
Length = 697
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = +3
Query: 768 PPXNXKKXGXSPQKNPPGA--PFLXXRXKKKKXPPXPP 875
PP KK QK PP A P R K K P PP
Sbjct: 326 PPIRAKKLEQLAQKKPPSAPKPKKVWREKPKTPAPSPP 363
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,529,649
Number of Sequences: 37544
Number of extensions: 249577
Number of successful extensions: 1008
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -