Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_L04
         (906 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    32   0.49 
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    32   0.49 
U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter...    29   4.6  
U55366-2|AAA97981.1|  156|Caenorhabditis elegans Hypothetical pr...    29   4.6  

>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 470 PPPXGXGXFLXXPPPXPP 523
           PPP G G F+  PPP PP
Sbjct: 664 PPPGGLGGFMPPPPPPPP 681


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 470 PPPXGXGXFLXXPPPXPP 523
           PPP G G F+  PPP PP
Sbjct: 664 PPPGGLGGFMPPPPPPPP 681


>U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 3 protein.
          Length = 302

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +2

Query: 473 PPXGXGXFLXXPPPXPPXKXXXPXXXGGGG 562
           PP   G  L  PPP PP +   P   G  G
Sbjct: 136 PPGRDGALLPGPPPKPPCQKCPPGPPGPAG 165


>U55366-2|AAA97981.1|  156|Caenorhabditis elegans Hypothetical
           protein F41F3.3 protein.
          Length = 156

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/47 (36%), Positives = 17/47 (36%)
 Frame = +3

Query: 474 PPGXXGXFXXXPXPXPPKKXXXPXXXGGGGXFXXPXGXXLXSPKKGG 614
           P G  G     P P PP     P   GGGG    P    L  P  GG
Sbjct: 20  PSGGGGGCGCAPPPPPPS----PCGCGGGGGLALPQLPPLSLPSLGG 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,249,526
Number of Sequences: 27780
Number of extensions: 149324
Number of successful extensions: 616
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)