Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_L03
         (930 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    32   0.006
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   1.9  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    24   1.9  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   2.6  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    23   3.4  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   3.4  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    23   4.5  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   4.5  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    23   4.5  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    23   4.5  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   5.9  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   5.9  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   7.8  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 32.3 bits (70), Expect = 0.006
 Identities = 26/96 (27%), Positives = 39/96 (40%)
 Frame = +1

Query: 388 KKMLAELENDEKKILKRDEELRKKDKHTPWNVDTISEPGFNKTVINTKALRPSNENLTEE 567
           K+   EL +DE +  K++EE   KDK  P   D   +   +    + K  +   E  TE+
Sbjct: 217 KEREKELSDDEAEEEKKEEEGEDKDKDKPKIEDVGEDEDEDTKKEDKKKKKTIKEKYTED 276

Query: 568 EKEAKMKKFIKENEKFLKQFGLLRKYEDSTKFLLDH 675
           E+  K K     N   + Q      Y+  T    DH
Sbjct: 277 EELNKTKPIWTRNADDISQEEYGEFYKSLTNDWEDH 312



 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 364 DSPNLNSLKKMLAELENDEKKILKRDEELRK 456
           D   L S+ K   EL  DE++  KR+E+  K
Sbjct: 526 DGKTLVSVTKEGLELPEDEEEKKKREEDKAK 556


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = +1

Query: 367 SPNLNSLKKMLAELENDEKKILKRDEELRKKDKHTPWNVDTISEPG 504
           S ++   K++  E+E++     K+++  +KK ++   +VD + E G
Sbjct: 208 SASIPKKKEVKEEIEDEPDHKWKKNDSSKKKTRYYYRSVDDVIEKG 253


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +3

Query: 231 SMAAPGPCGTHGRATPRERGTGAKKERKP 317
           SM    PCGT G           +K+RKP
Sbjct: 221 SMGVSVPCGTSGNPLEWTGQVTVRKKRKP 249


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +1

Query: 457 KDKHTPWNVDTISEPGFNKTVINTKALRPSNENLTEEEKEAKMKKFIKEN 606
           KD  +P   D ++    +   +N + +R      T E+     K+F KEN
Sbjct: 45  KDCSSPTPSDKLNTSTTSSVNVNDQNIRRYRTAFTREQLARLEKEFFKEN 94


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 107 YSNILNFTSKFKKKIDWFQETQILRIPYS 21
           +  ILN   K++ +    +   IL++PYS
Sbjct: 97  FLTILNSMHKYQPRFHLVRANDILKLPYS 125


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 13/40 (32%), Positives = 15/40 (37%)
 Frame = +3

Query: 237 AAPGPCGTHGRATPRERGTGAKKERKPTTSNRDQEKNFGS 356
           A  GP GTH    P  RG       +P   N     + GS
Sbjct: 52  AHTGPTGTHDAGFPSPRGALGAYPFRPMHQNSYTGYHLGS 91


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 98  ILNFTSKFKKKIDWFQETQILRIPYS 21
           ILN   K++ +    +   IL++PYS
Sbjct: 91  ILNSMHKYQPRFHLVRANDILKLPYS 116


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 520 INTKALRPSNENLTEEEKEAKMKKFI 597
           +NT     +N+ LTE EKE    K++
Sbjct: 253 LNTGRTNFTNKQLTELEKEFHFNKYL 278


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 520 INTKALRPSNENLTEEEKEAKMKKFI 597
           +NT     +N+ LTE EKE    K++
Sbjct: 42  LNTGRTNFTNKQLTELEKEFHFNKYL 67


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 520 INTKALRPSNENLTEEEKEAKMKKFI 597
           +NT     +N+ LTE EKE    K++
Sbjct: 42  LNTGRTNFTNKQLTELEKEFHFNKYL 67


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 790 AVHIGTVQTLDVIKTGVSSIMXV 858
           ++H GT  T+   +TG S +M V
Sbjct: 49  SIHGGTTVTITATQTGESEMMVV 71


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 319 VGFLSFFAPVPLSRGVALPCVPHGP 245
           VG  SF+ P+ +   V     PHGP
Sbjct: 51  VGEGSFYLPMNMQGFVKQQTAPHGP 75


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 233 DGGTRPVWNAWKSDAARKRNWSKERKKTNDV*PRPGKKFRKLMPT 367
           +G   PVW   +S+A  +     ERK       RP    + L+P+
Sbjct: 217 EGRLPPVWQGGESEALARLERHLERKAWVASFGRPKMTPQSLLPS 261


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,262
Number of Sequences: 336
Number of extensions: 4293
Number of successful extensions: 19
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26065116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)