Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_L03
(930 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 36 0.061
05_07_0354 - 29507068-29507170,29507406-29507431,29508264-295083... 33 0.43
12_02_1194 - 26903802-26904127,26904209-26905091,26905131-269054... 32 0.75
01_05_0487 + 22641133-22642182,22642276-22642863,22642961-226430... 31 1.3
02_03_0406 + 18663986-18664059,18665082-18665405,18665499-186655... 31 1.7
10_08_0154 + 15266430-15266953,15267748-15267820,15267893-152679... 29 7.0
06_01_0246 - 1856617-1856658,1856756-1856797,1856908-1857035,185... 29 7.0
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510... 29 7.0
12_02_0888 + 24027358-24027565,24027858-24027868 28 9.2
10_08_0598 + 19093417-19094220 28 9.2
05_04_0084 - 17788077-17789240 28 9.2
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 35.5 bits (78), Expect = 0.061
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 10/103 (9%)
Frame = +1
Query: 325 LTETRKKISEADAD-SPNLNSLKKMLAELENDEKKILKRDEELRKKDKHTPWNVDTISEP 501
L E++KK+ E D N+LKK L+NDEK++ +++L+ +++ + +
Sbjct: 386 LNESKKKLEEWQNDLDTKSNALKKWEESLQNDEKQL--SEQKLQIENERKQAEMYKLELE 443
Query: 502 GFNKTVI--NTKALRPSNE-NLTEEEKE------AKMKKFIKE 603
TV+ K L+ N LTEEE++ A++KK I E
Sbjct: 444 SLKATVVAEKEKILQEQNNLKLTEEERQEHIMLTAQLKKEIDE 486
Score = 29.5 bits (63), Expect = 4.0
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = +1
Query: 400 AELENDEKKILKRDEELRKKDKHTPWNVDTISEPGFNKTVINTKALRPSNENLTEEEKEA 579
A+L EK + +E+L KK++ + + E N + AL+ E+L +EK+
Sbjct: 363 ADLVQREKDVRSSEEKLSKKEQVLNESKKKLEE-WQNDLDTKSNALKKWEESLQNDEKQL 421
Query: 580 KMKKFIKENEK 612
+K ENE+
Sbjct: 422 SEQKLQIENER 432
>05_07_0354 -
29507068-29507170,29507406-29507431,29508264-29508301,
29508722-29508825,29509005-29509024,29509251-29509299,
29510319-29510406,29510463-29510562,29510660-29510737,
29512688-29512804,29513718-29513821,29514497-29514569,
29514904-29514981,29515091-29515215,29515278-29515341,
29515439-29515597,29515950-29516048,29516496-29516624,
29517010-29517075,29517160-29517304,29517379-29517500,
29517683-29517838,29517918-29518029,29518891-29519036,
29519148-29519252,29519391-29519540,29519703-29519776,
29519902-29520055,29520142-29520408
Length = 1016
Score = 32.7 bits (71), Expect = 0.43
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = +1
Query: 376 LNSLKKMLAELENDEKKILKRDEELRKKD---KHTPW 477
LN+LK + AELE D +++ +RD L+K + K PW
Sbjct: 224 LNNLKALNAELEKDVERVRQRDRLLKKAELMKKKLPW 260
>12_02_1194 -
26903802-26904127,26904209-26905091,26905131-26905427,
26905638-26905709
Length = 525
Score = 31.9 bits (69), Expect = 0.75
Identities = 23/94 (24%), Positives = 46/94 (48%)
Frame = +1
Query: 331 ETRKKISEADADSPNLNSLKKMLAELENDEKKILKRDEELRKKDKHTPWNVDTISEPGFN 510
E KK E AD + +END ++++ ++E R + + N+++ F
Sbjct: 314 EKTKKTQEGMADKSGTSQ------RVENDSEEVIYDEDEPRVQLVGSEENMESQESSDFA 367
Query: 511 KTVINTKALRPSNENLTEEEKEAKMKKFIKENEK 612
V L +NE++TEE+++ ++ KE++K
Sbjct: 368 AAV--RVVLSQTNEHMTEEKRKKSLRLLEKEDKK 399
>01_05_0487 +
22641133-22642182,22642276-22642863,22642961-22643068,
22643582-22643692,22643784-22643849,22644858-22644917,
22644990-22645119,22645159-22645547,22645783-22645902,
22645957-22646022,22646190-22646255
Length = 917
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Frame = +1
Query: 331 ETRKKISEADADSP--NLNSLKKMLAELENDEKKILKRDEELRKK 459
+T K++EADA P ++ + ++LA+ + E+ + KR+EELRK+
Sbjct: 156 KTTSKVAEADAKKPPRHVRVMLEVLAKRKEAEE-LRKREEELRKR 199
>02_03_0406 +
18663986-18664059,18665082-18665405,18665499-18665559,
18666136-18666282,18666368-18666492,18666619-18666648,
18666689-18666893,18667532-18667741,18667886-18667888,
18670034-18670942,18671239-18672069
Length = 972
Score = 30.7 bits (66), Expect = 1.7
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +1
Query: 481 VDTISEPGFNKTVINTKALRPSNENLTEEEKEAKMKKFIKENEKFLKQFGLLRKYE 648
+D + EP F K + KA N + EE + K IKE+++ LK+F L K E
Sbjct: 177 IDGLIEPTFMKWIQEEKAWE--NSKINEELMKTVTSK-IKEDDRILKRFNRLGKSE 229
>10_08_0154 +
15266430-15266953,15267748-15267820,15267893-15267949,
15268248-15268303,15269584-15269797,15270497-15270538,
15270661-15270735,15270820-15270903,15271880-15271944,
15272436-15272655,15272820-15272908,15273326-15273440,
15273519-15273554
Length = 549
Score = 28.7 bits (61), Expect = 7.0
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 255 GTHGRATPRERGTGAKKERKPTTSNRDQEKNFGS*CRQP*SKFIKKDAS 401
G G R+R G +KER + +D EK+ G + SK +KD S
Sbjct: 65 GGGGGREHRDRDDGKEKERSSRSRGKDAEKDRGKDGEKDRSKEAEKDRS 113
>06_01_0246 -
1856617-1856658,1856756-1856797,1856908-1857035,
1857311-1857518,1857617-1857797,1858227-1858271,
1858565-1858918,1860282-1860325
Length = 347
Score = 28.7 bits (61), Expect = 7.0
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Frame = +1
Query: 334 TRKKISEADAD---SPNLNSLKKMLAELENDEKKILK 435
TRKK S+A+A + N+N L K++ ++ ND+ +L+
Sbjct: 172 TRKKCSKAEAFQNVNNNMNQLAKVILDMYNDDHNLLE 208
>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
27353739-27354606,27354784-27355957
Length = 1790
Score = 28.7 bits (61), Expect = 7.0
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 216 YPIIVSMAAPGPCGTHGRATPRERGTGAKKERKPTTSNRDQEKN 347
YP+ +M CG R P + GT + ++ PT++ D+E N
Sbjct: 1190 YPL--NMDKHPSCGVSSREHPTQLGTCSAQQEPPTSNVEDKEDN 1231
>12_02_0888 + 24027358-24027565,24027858-24027868
Length = 72
Score = 28.3 bits (60), Expect = 9.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 234 MAAPGPCGTHGRATPRERGTG 296
+ APG CG GRA R R G
Sbjct: 16 LGAPGACGAAGRAVGRRRAAG 36
>10_08_0598 + 19093417-19094220
Length = 267
Score = 28.3 bits (60), Expect = 9.2
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 340 KKISEADADSPNLNSLKKMLAELENDEKKILKR 438
KK+S A A + L L++ + ELE+ +K+ +R
Sbjct: 220 KKVSPATATAAALERLEECIGELESGSEKVFRR 252
>05_04_0084 - 17788077-17789240
Length = 387
Score = 28.3 bits (60), Expect = 9.2
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Frame = +1
Query: 331 ETRKKISEADADSPNLNSL------KKMLAELENDEKKILKRDEELRKKDKHTPWNVDTI 492
E K++ +A D L ++ E +D+ K++K E ++K K + +
Sbjct: 274 EEAKRMQQAKEDPEKATKLAWDLARRRAAGEKVHDDPKLIK--ESMKKDKKRQQKHAEQW 331
Query: 493 SEPGFNKTVINTKALRPSN--ENLTEEEKEAKMKKFIKENEKFLK 621
E K V K R S EN+ E + KM+K K +K ++
Sbjct: 332 KER--QKMVDKQKKERQSKRTENIRERANQKKMRKIEKREKKLMR 374
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,471,557
Number of Sequences: 37544
Number of extensions: 438732
Number of successful extensions: 1448
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1446
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2659245980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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