Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_L03
         (930 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    28   0.11 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   5.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.9  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 28.3 bits (60), Expect = 0.11
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 620 FKNFSFSLINFFILASFSSSVRF 552
           F + SF LIN+FI   F+S VRF
Sbjct: 11  FPSTSFILINYFIFLYFNSLVRF 33


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -3

Query: 364 RHQLPKFFSWSRLDVVGFLSFFAPVP 287
           RHQ   FF    +D V F  F  P P
Sbjct: 299 RHQKRYFFGRDSVDHVDFDEFLPPPP 324


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 511 KTVINTKALRPSNENLTEEEKEAKMKKFIKENE 609
           +TV    AL PS+   TEEEK+ K K+ +  +E
Sbjct: 521 ETVGLLNALPPSSMKETEEEKK-KTKQSLSPSE 552


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,757
Number of Sequences: 438
Number of extensions: 4749
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30355689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)