Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_L02
         (859 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL359392-1|CAI40208.2| 1055|Homo sapiens LIM domain 7 protein.         33   1.0  
AL137782-2|CAI40006.2| 1055|Homo sapiens LIM domain 7 protein.         33   1.0  
AL137121-1|CAI39479.2| 1055|Homo sapiens LIM domain 7 protein.         33   1.0  
AF174600-1|AAF04521.1|  255|Homo sapiens F-box protein Fbx20 pro...    33   1.0  
AB020665-1|BAA74881.2| 1557|Homo sapiens KIAA0858 protein protein.     32   3.1  

>AL359392-1|CAI40208.2| 1055|Homo sapiens LIM domain 7 protein.
          Length = 1055

 Score = 33.5 bits (73), Expect = 1.0
 Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
 Frame = +1

Query: 607 PDRTIKIPGVSPWKLPRALSCSRPCRLPDTCPPFSLREAWRFLI-AHAVGISVRCRSFAP 783
           PDR   +P   PW LP  +     C L  TCP      + R L+ ++             
Sbjct: 210 PDRYHPVPFPEPWTLPPEIQAKFLCVLERTCPSKEKSNSCRILVPSYRQKKDDMLTRKIQ 269

Query: 784 SWAVCTN-PPFSPTAAP 831
           SW + T  PP S T  P
Sbjct: 270 SWKLGTTVPPISFTPGP 286


>AL137782-2|CAI40006.2| 1055|Homo sapiens LIM domain 7 protein.
          Length = 1055

 Score = 33.5 bits (73), Expect = 1.0
 Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
 Frame = +1

Query: 607 PDRTIKIPGVSPWKLPRALSCSRPCRLPDTCPPFSLREAWRFLI-AHAVGISVRCRSFAP 783
           PDR   +P   PW LP  +     C L  TCP      + R L+ ++             
Sbjct: 210 PDRYHPVPFPEPWTLPPEIQAKFLCVLERTCPSKEKSNSCRILVPSYRQKKDDMLTRKIQ 269

Query: 784 SWAVCTN-PPFSPTAAP 831
           SW + T  PP S T  P
Sbjct: 270 SWKLGTTVPPISFTPGP 286


>AL137121-1|CAI39479.2| 1055|Homo sapiens LIM domain 7 protein.
          Length = 1055

 Score = 33.5 bits (73), Expect = 1.0
 Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
 Frame = +1

Query: 607 PDRTIKIPGVSPWKLPRALSCSRPCRLPDTCPPFSLREAWRFLI-AHAVGISVRCRSFAP 783
           PDR   +P   PW LP  +     C L  TCP      + R L+ ++             
Sbjct: 210 PDRYHPVPFPEPWTLPPEIQAKFLCVLERTCPSKEKSNSCRILVPSYRQKKDDMLTRKIQ 269

Query: 784 SWAVCTN-PPFSPTAAP 831
           SW + T  PP S T  P
Sbjct: 270 SWKLGTTVPPISFTPGP 286


>AF174600-1|AAF04521.1|  255|Homo sapiens F-box protein Fbx20
           protein.
          Length = 255

 Score = 33.5 bits (73), Expect = 1.0
 Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
 Frame = +1

Query: 607 PDRTIKIPGVSPWKLPRALSCSRPCRLPDTCPPFSLREAWRFLI-AHAVGISVRCRSFAP 783
           PDR   +P   PW LP  +     C L  TCP      + R L+ ++             
Sbjct: 84  PDRYHPVPFPEPWTLPPEIQAKFLCVLERTCPSKEKSNSCRILVPSYRQKKDDMLTRKIQ 143

Query: 784 SWAVCTN-PPFSPTAAP 831
           SW + T  PP S T  P
Sbjct: 144 SWKLGTTVPPISFTPGP 160


>AB020665-1|BAA74881.2| 1557|Homo sapiens KIAA0858 protein protein.
          Length = 1557

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
 Frame = +1

Query: 607 PDRTIKIPGVSPWKLPRALSCSRPCRLPDTCPPFSLREAWRFLI-AHAVGISVRCRSFAP 783
           PDR   +P   PW LP  +     C    TCP      + R L+ ++             
Sbjct: 474 PDRYHPVPFPEPWTLPPEIQAKFLCVFERTCPSKEKSNSCRILVPSYRQKKDDMLTRKIQ 533

Query: 784 SWAVCTN-PPFSPTAAP 831
           SW + T  PP S T  P
Sbjct: 534 SWKLGTTVPPISFTPGP 550


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,429,130
Number of Sequences: 237096
Number of extensions: 2656190
Number of successful extensions: 12496
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12484
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10928473528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)