Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_L02
         (859 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    26   0.51 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   2.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   2.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   2.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   3.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   8.3  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 486 SHVLSCVIPLILWITVLPPLSELIPLAA 403
           S +LS V+ L+L   +LPP S ++PL A
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIA 297


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 623 RYQAFPPGSSLVRSPVPDPAAYRIPVRL 706
           +YQ  P    +  + + DPA YRI  R+
Sbjct: 398 KYQIVPSALEIFSTSMKDPAFYRIYKRI 425


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 623 RYQAFPPGSSLVRSPVPDPAAYRIPVRL 706
           +YQ  P    +  + + DPA YRI  R+
Sbjct: 398 KYQIVPSALEIFSTSMKDPAFYRIYKRI 425


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 787 WAVCTNPPFSPTAAP 831
           W V  +PP+SP  AP
Sbjct: 264 WDVLPHPPYSPDLAP 278


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 507 GLLLAFCSHVL-SCVIPLILWITVLPPLSELIPL 409
           G  ++ CS +L S  +  +L   ++PP S  IPL
Sbjct: 278 GEKVSLCSSILLSLTVFFLLLAEIIPPTSLAIPL 311


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = +2

Query: 638 PPGSSLVRS-PVPDPAAYRIPVR 703
           PP S+ V   P PDP    IPVR
Sbjct: 437 PPSSNPVSPVPSPDPLDLAIPVR 459


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 486 SHVLSCVIPLILWITVLPPLSELIPL 409
           S +LS  +  +L   ++PP S ++PL
Sbjct: 277 SILLSLTVFFLLLAEIIPPTSLVVPL 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,467
Number of Sequences: 438
Number of extensions: 5643
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)