Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_L01
         (889 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    29   0.037
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    25   0.60 
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    24   1.4  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   7.4  
AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of act...    21   9.8  
AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity mod...    21   9.8  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   9.8  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 29.5 bits (63), Expect = 0.037
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +3

Query: 504 PYPVAQSVPYPVAQSA-PYPVAQNAPYPTTQGAPYPTTHGAPYPVHHGCRR 653
           P P  QS   P++ S    P A   P  T+ G+P      A  P+H   +R
Sbjct: 11  PPPAPQSAATPISSSGMTSPAAAPPPATTSSGSPASVASNASAPLHIPAKR 61


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 474 GAPYPTTQGLPYP 512
           GAPYP+T   PYP
Sbjct: 11  GAPYPSTDQNPYP 23



 Score = 25.4 bits (53), Expect = 0.60
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 594 GAPYPTTHGAPYP 632
           GAPYP+T   PYP
Sbjct: 11  GAPYPSTDQNPYP 23



 Score = 24.6 bits (51), Expect = 1.0
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
 Frame = +3

Query: 453 APYPTTQGAPYPT--TQGLPYPVAQSVPYPVAQSAPYPVAQNAPYPTTQGAPYPTTHGAP 626
           APYP+T   PYP+   +   +    S PY +  +       +A    T     PTT   P
Sbjct: 12  APYPSTDQNPYPSIGVESSAFYSPLSNPYALKDAGGTAADMSA---WTSAGLQPTTGYYP 68

Query: 627 Y 629
           Y
Sbjct: 69  Y 69



 Score = 22.6 bits (46), Expect = 4.2
 Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
 Frame = +3

Query: 498 GLPYPVAQSVPYP---VAQSAPYPVAQNAPY 581
           G PYP     PYP   V  SA Y    N PY
Sbjct: 11  GAPYPSTDQNPYPSIGVESSAFYSPLSN-PY 40


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +3

Query: 438 RQLRXAPYPTTQGAPYPTTQGLPYPVAQSVPYPVAQSAPYPVAQNAPYPTTQ 593
           R +    YP  + A + T  G    + + VP PV +    P +  AP P ++
Sbjct: 365 RGVSGTKYPILK-AIHQTLGGSSNEIVEPVPQPVEEVTQKPSSTKAPAPPSR 415



 Score = 21.4 bits (43), Expect = 9.8
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +3

Query: 414 GNSGXRHTRQLRXAPYPTTQGAPYPTTQGLPYPVAQSVPYPVAQSAPYPVAQN 572
           G SG ++   +  A + T  G+     + +P PV +    P +  AP P +++
Sbjct: 366 GVSGTKYP--ILKAIHQTLGGSSNEIVEPVPQPVEEVTQKPSSTKAPAPPSRD 416


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = +3

Query: 528 PYPVAQSAPYPVAQNAPYPTTQGAPYPTTHGAPYPVH 638
           P  V  S   P A      T  G P P+T  +P  V+
Sbjct: 201 PTKVKASKASPAAAPRSVATPTGIPTPSTSASPPTVN 237


>AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of
           activity of ets genes protein.
          Length = 108

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 424 PELPGMAHPESGKAH*RRRLWAVSTRVPLSGAVDSSRILYK 302
           PE+P      +GKA     L    +RVPL G     ++LYK
Sbjct: 58  PEVPSSRFLMNGKALCLMSLGMFLSRVPLGG-----KLLYK 93


>AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity
           modulator protein.
          Length = 108

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 424 PELPGMAHPESGKAH*RRRLWAVSTRVPLSGAVDSSRILYK 302
           PE+P      +GKA     L    +RVPL G     ++LYK
Sbjct: 58  PEVPSSRFLMNGKALCLMSLGMFLSRVPLGG-----KLLYK 93


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 537 VAQSAPYPVAQNAPYPTTQGAPYPTTHGAPY 629
           + +++P PV+ N    T+  A  P+   AP+
Sbjct: 151 LTKTSPTPVSINNNTSTSSSASSPSVTAAPH 181


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,601
Number of Sequences: 336
Number of extensions: 4201
Number of successful extensions: 27
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24617054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)