Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_L01
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   2.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.5  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
            75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 24/136 (17%), Positives = 51/136 (37%)
 Frame = +3

Query: 249  NNGLVKNSTRCLVNHHSPLYNILLLSTAPERGTRVDTAHKRRRQCALPDSGCAIPGNSGX 428
            + GL++ +T        P  +++  +T   +  +     ++++Q     S   + GNS  
Sbjct: 765  SQGLLQCATSNYSTTRWPATSVITTTTGARQQQQQQQQQQQQQQQQQSSSDYLMVGNSPA 824

Query: 429  RHTRQLRXAPYPTTQGAPYPTTQGLPYPVAQSVPYPVAQSAPYPVAQNAPYPTTQGAPYP 608
               R L  A   +T  +P P +      V    P  + +          P   ++ +P P
Sbjct: 825  SSPRYLSAAATSSTSTSPRPASSTAATLVLSGCPSNMMELQVDIADSQQPLNLSKKSPSP 884

Query: 609  TTHGAPYPVHHGCRRI 656
                +P P+   C+ +
Sbjct: 885  ----SPRPLVGPCKAL 896


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -3

Query: 530 WHTLSNWVW*TLSCRVWRTLSCRVW 456
           W     W++  L C +W  L+  VW
Sbjct: 125 WEVFKVWIFGDLWCSIW--LAVDVW 147


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 15/54 (27%), Positives = 19/54 (35%)
 Frame = +3

Query: 465 TTQGAPYPTTQGLPYPVAQSVPYPVAQSAPYPVAQNAPYPTTQGAPYPTTHGAP 626
           T Q  P  T Q          P P    +P    + +P   +QG P     GAP
Sbjct: 2   TQQKQPIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,314
Number of Sequences: 438
Number of extensions: 4956
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)