Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K24
         (868 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    36   1.3  
UniRef50_Q65UU3 Cluster: Putative uncharacterized protein; n=2; ...    35   2.3  

>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 35.9 bits (79), Expect = 1.3
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = +1

Query: 736 SALMNRPXPGXRRFAYWAPF 795
           +ALMNRP  G RRFAYWA F
Sbjct: 25  AALMNRPTRGERRFAYWALF 44


>UniRef50_Q65UU3 Cluster: Putative uncharacterized protein; n=2;
           Pasteurellaceae|Rep: Putative uncharacterized protein -
           Mannheimia succiniciproducens (strain MBEL55E)
          Length = 449

 Score = 35.1 bits (77), Expect = 2.3
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
 Frame = -1

Query: 406 LLHSIYLGLCT*ILKNYF--SGFRCFRGLQIFIKFVEAVYHRAKVFLNSLPGPRRIQLFP 233
           LL  I+LGLC   + N F  S F  F G+ +F+ F+E + +  + F+NSL     + +F 
Sbjct: 10  LLIIIFLGLCIVTIDNIFIVSDFVLF-GIFLFLLFLEVIINPKRNFINSLV---LLAVFL 65

Query: 232 SIPQLFS-SHSQPAYLGY 182
           +I  +F+  HS+ +Y  Y
Sbjct: 66  NILGVFAIEHSEGSYYLY 83


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 593,470,915
Number of Sequences: 1657284
Number of extensions: 9128978
Number of successful extensions: 20811
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20807
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77062818868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)