Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K24
         (868 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1085 + 27491735-27492754,27492854-27492978,27493088-274932...    29   3.6  
03_05_0825 - 27986393-27986767,27987541-27987625,27987936-279880...    28   8.4  

>06_03_1085 +
           27491735-27492754,27492854-27492978,27493088-27493232,
           27493328-27493591
          Length = 517

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 172 KEDNSLNTLAESAKKTIEELREKVESALAPXDC*EKLWHDGR 297
           +E N L+ L +  +K + ELR KVE A+       KL+ DG+
Sbjct: 49  EESNFLDDLKDGERKALAELRAKVEEAIVDG----KLFDDGK 86


>03_05_0825 -
           27986393-27986767,27987541-27987625,27987936-27988036,
           27988144-27988227,27988868-27988939,27989203-27989319,
           27989386-27989526,27989951-27990122,27990324-27990372,
           27990773-27990821,27991240-27991270,27991301-27991371
          Length = 448

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +1

Query: 169 PKEDNSLNTLAESAKKTIEELREKVE 246
           PKE ++  T+A + +KT EE+R +++
Sbjct: 91  PKESSTATTMAAATEKTAEEIRRELQ 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,791,552
Number of Sequences: 37544
Number of extensions: 247997
Number of successful extensions: 460
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)