Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K24
         (868 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46180.1 68415.m05742 intracellular protein transport protein...    28   7.0  
At2g16640.1 68415.m01910 chloroplast outer membrane protein, put...    28   7.0  
At3g16620.1 68416.m02124 chloroplast outer membrane protein, put...    28   9.3  

>At2g46180.1 68415.m05742 intracellular protein transport protein
           USO1-related similar to Intracellular protein transport
           protein USO1 (Swiss-Prot:P25386) [Saccharomyces
           cerevisiae]
          Length = 725

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
 Frame = +1

Query: 148 AFVKRDAPKEDNSLNTL---AESAKKTIEELREKV---ESALAPX-DC*EKLWHDGRQLQ 306
           A  K DA K    L  +    ES+KK  EE+  KV   E+  A   +   K+  D  +++
Sbjct: 491 AVAKEDAMKLSARLKDVDEQLESSKKEKEEITSKVLHAENIAAEWKNRVSKVEDDNAKVR 550

Query: 307 RIL*KSEARGSTESLRSNFLVSKYI 381
           R+L +S  R +  S+ S+FLV + I
Sbjct: 551 RVLEQSMTRLNRMSMDSDFLVDRRI 575


>At2g16640.1 68415.m01910 chloroplast outer membrane protein,
           putative similar to chloroplast protein import component
           Toc159 [Pisum sativum] GI:8489806, chloroplast outer
           envelope protein 86 [Pisum sativum] GI:599958,
           GTP-binding protein [Pisum sativum] GI:576509
          Length = 1206

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 135 EADSQQDNQQLVHFGYLRTSSRIGYKNHQLKILRIPYR 22
           E D  ++  QL+   +LR + R+G   H + + ++ YR
Sbjct: 496 EHDETREKLQLIRVKFLRLAHRLGQTPHNVVVAQVLYR 533


>At3g16620.1 68416.m02124 chloroplast outer membrane protein,
           putative similar to chloroplast protein import component
           Toc159 [Pisum sativum] GI:8489806, chloroplast outer
           envelope protein 86 [Pisum sativum] GI:599958,
           GTP-binding protein [Pisum sativum] GI:576509
          Length = 1089

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 135 EADSQQDNQQLVHFGYLRTSSRIGYKNHQLKILRIPYR 22
           E D  ++  Q +   +LR S R+G   H + + ++ YR
Sbjct: 378 EHDETREKLQFIRVKFLRLSHRLGQTPHNVVVAQVLYR 415


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,729,680
Number of Sequences: 28952
Number of extensions: 203300
Number of successful extensions: 419
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)