Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K23
         (953 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    28   2.2  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    28   2.2  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    27   2.9  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    27   3.9  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    27   5.1  

>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -3

Query: 174 ADTEIRHKRPIVPYHS*FVEFSDSQIEEILEFIAFIHDFFDN 49
           AD   RH+R   P     V  S  + E  +   AFI  FFDN
Sbjct: 274 ADLAFRHQRVYCPKDKTLVHLSPPERELSVHEDAFIGSFFDN 315


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +3

Query: 537 PXSTIYLDDSTVSQPNLKNTVRCVALAIYYHIKNRMSERRLDIFDEKLHPLSK 695
           P S+  L  + +   N+K +   ++ +    ++ R+   R+D+ DE LHP S+
Sbjct: 226 PSSSFLLPLTQIDSQNVKRSNNYLSTSPPI-LEQRLKRHRIDVSDEDLHPSSQ 277


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +2

Query: 323 KLEDYLPEGEVSSNNIQHISEREPDDGDI-DPSQDPMAGTIFMERSKASIENGMTRKRSQ 499
           K  D  PEG+ S+      S+ +  DG I DP Q  +           S+    T  ++Q
Sbjct: 74  KAPDSKPEGDKSTGQEADKSQNQSKDGSITDPVQAAVLALSVAYAKPTSVSLSPTDLQAQ 133

Query: 500 HQIADNKLKKSSS 538
            ++ +   ++S+S
Sbjct: 134 SKLIEKPRRRSAS 146


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 259 DFTTYDDYKECSLSFYTHCVTTRYTEII 176
           D    D++ +  L FY  C T+++ EII
Sbjct: 475 DCQKIDEFMDAELKFYKECQTSQWEEII 502


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 252 QHMTITKNVRYHSTHIVSRLDIRK**ADTEIR 157
           QH+ + K ++Y +      LD++K   DTEI+
Sbjct: 99  QHLLVQKIIKYKNHQYYEILDLKKTCTDTEIK 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,022
Number of Sequences: 5004
Number of extensions: 56510
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)