Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K23
         (953 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33245| Best HMM Match : Sterile (HMM E-Value=4.5)                   33   0.34 
SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)                    31   1.0  
SB_27376| Best HMM Match : Neur_chan_memb (HMM E-Value=1.6e-05)        29   5.5  
SB_49093| Best HMM Match : rve (HMM E-Value=1.5e-17)                   29   7.3  
SB_286| Best HMM Match : M (HMM E-Value=0.39)                          29   7.3  
SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24)                   28   9.7  

>SB_33245| Best HMM Match : Sterile (HMM E-Value=4.5)
          Length = 244

 Score = 33.1 bits (72), Expect = 0.34
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
 Frame = +2

Query: 254 KIMGNQNSCCCYRSPSPIRKDIVKLEDYLPEGEVSSNNIQ--HISEREPDDGDIDPSQDP 427
           K+M  Q SC    S   I    V+ + Y      +++N+   H+ E EPDDG ID +   
Sbjct: 42  KLMNIQESC----SSKGIEIGSVETDKYFRSESKNNSNLAETHLKENEPDDGGIDETHRA 97

Query: 428 MAG-----TIFMERSKASIENGMTRKRSQHQIA 511
             G     T   E S+ ++E G T     + +A
Sbjct: 98  WEGERDNETKTREGSEGNMEKGGTAVDLHYMVA 130


>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2204

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +2

Query: 338 LPEGEVSSNNIQHISEREPDDGDIDPSQDPMAGTIFMERSKASIENGMT 484
           +PE +++   + +I+ ++PDDGD+  + D M    F  R K  I  G T
Sbjct: 603 VPENKLAGYPVAYINVKDPDDGDV-TTCDVMTDEFFGIRDKELIVTGNT 650


>SB_27376| Best HMM Match : Neur_chan_memb (HMM E-Value=1.6e-05)
          Length = 181

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 386 REPDDGDIDPSQDPMAGTIFMERSKASIENGMTRKRSQHQI 508
           ++P+ GD+ P   P    +FM   K +  N MT K    ++
Sbjct: 113 QQPNYGDVKPPNTPGPAKVFMREKKFTENNPMTYKEISEKL 153


>SB_49093| Best HMM Match : rve (HMM E-Value=1.5e-17)
          Length = 313

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +2

Query: 362 NNIQHISEREPDDGDIDPSQDPMAGTIFMER-SKASIENGMTRKRSQHQIADNKLKKSSS 538
           NN++   ER  DD  +  S D    TI  ++ S A+ +N  +RKR   ++ + +L++   
Sbjct: 8   NNLKQKKERISDDPTVLSSADE--NTIKRKKWSYANXKNSTSRKRKDVEMGEKQLQRDQP 65

Query: 539 XFYNLLR 559
               LLR
Sbjct: 66  NDSKLLR 72


>SB_286| Best HMM Match : M (HMM E-Value=0.39)
          Length = 414

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +2

Query: 341 PEGEVSSNNIQHISEREPDDGDIDPS---QDPMAGTIFMERSKASIENG-MTRKRSQ 499
           P+G       +  ++RE   G        ++P  GT+  ERSK + +NG + R+RS+
Sbjct: 224 PKGNAQRERSKGNTQRERSKGSAHKGTLKREPSKGTLKRERSKGNAQNGTLKRERSK 280


>SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24)
          Length = 729

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -1

Query: 722 DYHIITHTFFAQRMKFLIKNI*PALRHSILYVIVNSKCYTPHSVF-QIWLRH 570
           D +  TH  FA     +  ++  A+RH  +  ++   CY P  +  +I  RH
Sbjct: 190 DGNAFTHVLFACLYNIMNSSVGVAVRHKCINAMLRLACYAPSDLLSEILKRH 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,540,961
Number of Sequences: 59808
Number of extensions: 413200
Number of successful extensions: 1002
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2800542235
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)