Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K23
         (953 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13480.1 68416.m01696 expressed protein ; expression supporte...    31   1.1  
At5g05520.1 68418.m00599 outer membrane OMP85 family protein con...    30   2.6  
At5g61150.2 68418.m07672 leo1-like family protein weak similarit...    29   3.4  
At5g61150.1 68418.m07671 leo1-like family protein weak similarit...    29   3.4  
At3g11070.1 68416.m01337 outer membrane OMP85 family protein con...    29   4.5  

>At3g13480.1 68416.m01696 expressed protein ; expression supported
           by MPSS
          Length = 205

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +2

Query: 242 VICCKIMGNQNSCCCYRSPSPIRKDIVKLEDYLPEGEVSSNNIQHISEREPDDGDID 412
           V+ CKI      C C  SP       +KLE+  P  +VSS+    + +R+ DD D D
Sbjct: 3   VLLCKIQCPSFICFCKPSPHIYASGSLKLENTFP--QVSSSTTV-VDDRDHDDNDDD 56


>At5g05520.1 68418.m00599 outer membrane OMP85 family protein
           contains Pfam profile PF01103: outer membrane protein,
           OMP85 family
          Length = 524

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 304 GRWTPIAAATILITHDFTTYDDYKECSLSFYTHCVTTRYTEI 179
           GR TP  +   L T D+  +  YKE +L      + ++Y E+
Sbjct: 214 GRPTPFTSRVYLSTQDWLKFSSYKERALGLSLGLIASKYHEL 255


>At5g61150.2 68418.m07672 leo1-like family protein weak similarity
           to SP|P38439 LEO1 protein {Saccharomyces cerevisiae};
           contains Pfam profile PF04004: Leo1-like protein;
           supporting cDNA gi|21929714|gb|AF490422.1|
          Length = 623

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +2

Query: 344 EGEVSSNNIQHISEREPDDGDIDPSQDPMAGTIFMERSKASIENGMTRKRSQHQIADNK 520
           E E SS       E E  D D D  ++   G +  +R +  +E+G  R   +H  ++++
Sbjct: 83  EREQSSQEADPQEESEARDSDSDNKEEEHGGRVAKKRRQEVVESGSERSGEKHYESEDE 141


>At5g61150.1 68418.m07671 leo1-like family protein weak similarity
           to SP|P38439 LEO1 protein {Saccharomyces cerevisiae};
           contains Pfam profile PF04004: Leo1-like protein;
           supporting cDNA gi|21929714|gb|AF490422.1|
          Length = 625

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +2

Query: 344 EGEVSSNNIQHISEREPDDGDIDPSQDPMAGTIFMERSKASIENGMTRKRSQHQIADNK 520
           E E SS       E E  D D D  ++   G +  +R +  +E+G  R   +H  ++++
Sbjct: 83  EREQSSQEADPQEESEARDSDSDNKEEEHGGRVAKKRRQEVVESGSERSGEKHYESEDE 141


>At3g11070.1 68416.m01337 outer membrane OMP85 family protein
           contains Pfam profile PF01103: outer membrane protein,
           OMP85 family
          Length = 520

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 304 GRWTPIAAATILITHDFTTYDDYKECSLSFYTHCVTTRYTEII 176
           G  TP  +   L T D+  +  YKE SL       +++Y E+I
Sbjct: 217 GLSTPFTSRLFLSTQDWLKFSSYKERSLGLSLGLFSSKYHELI 259


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,251,830
Number of Sequences: 28952
Number of extensions: 281171
Number of successful extensions: 712
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2295205728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)