Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K21
         (899 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain...    29   3.2  
At1g78540.1 68414.m09154 transcription factor-related weak simil...    24   4.8  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    29   5.6  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    29   5.6  
At2g16190.1 68415.m01855 hypothetical protein                          29   5.6  
At3g20830.1 68416.m02634 protein kinase family protein contains ...    28   7.3  
At5g15580.1 68418.m01824 expressed protein unknown protein F14P3...    28   9.7  
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ...    28   9.7  

>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
           protein weak similarity to transcription co-repressor
           Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 744

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = -2

Query: 448 PLILWITVLPPLSELIPLAAAERPXXXXXXXXXXXXXQYANRLSPRVGRFI--NAEKTSH 275
           P+ L IT++PP +     + A++P              + N+L P+  R I   AEK +H
Sbjct: 264 PVKLKITIIPPKARRTIPSEADKPTHTDELN-------FMNKLPPKRRRTIPSEAEKPTH 316

Query: 274 TSTLNLKHKM 245
           T  LN  +K+
Sbjct: 317 TDELNFMNKL 326


>At1g78540.1 68414.m09154 transcription factor-related weak
           similarity to STAT protein (GI:2230824) and STATc
           protein (GI:13235235) [Dictyostelium discoideum]
          Length = 638

 Score = 24.2 bits (50), Expect(2) = 4.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 805 LNGGFRAHSPAWSERXYTRTEIPXSV 728
           +NG +R+ SP W E   T+ E   S+
Sbjct: 564 INGMWRSSSPKWIEGFITKEEAEHSL 589



 Score = 23.0 bits (47), Expect(2) = 4.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 652 QESARGSFQGETPGIFIV 599
           +E A  S QG+ PG FI+
Sbjct: 582 KEEAEHSLQGQEPGTFIL 599


>At5g45050.2 68418.m05524 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 347  PLPRSLTRCARSFGCGERYQLTQRR 421
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193


>At5g45050.1 68418.m05523 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 347  PLPRSLTRCARSFGCGERYQLTQRR 421
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221


>At2g16190.1 68415.m01855 hypothetical protein
          Length = 303

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 613 QAFPPGSSLVRSPVPTLPLTDTCPPFSLREAWRFLIAHSR 732
           QA PP +  VR+P+P  P  +  PP  L +     +A  R
Sbjct: 79  QAVPPPNVSVRTPLPYQPSEEVLPPPQLNQVATVALATPR 118


>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 338 PIRKPPLPARWPIH*CRKNLPHL 270
           P   PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406


>At5g15580.1 68418.m01824 expressed protein unknown protein F14P3.18
           - Arabidopsis thaliana, EMBL:AC009755
          Length = 927

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 595 SGFATSDLSVDXCDARQGGGAYGKTPATRPFYGSWPFAGLLL 470
           S F+++D+S       Q G + G+ P   P  GS  + GL++
Sbjct: 102 SSFSSADISTTASQFEQPGLSNGENPVREPTNGSPRWGGLMM 143


>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
           protein similar to RRM-containing protein SEB-4 [Xenopus
           laevis] GI:8895698; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 244

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 18/65 (27%), Positives = 25/65 (38%)
 Frame = -2

Query: 589 FATSDLSVDXCDARQGGGAYGKTPATRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPLS 410
           F  S  S+D          YG   A  P YGS P  G+    +   YP + +     P++
Sbjct: 138 FGFSSYSMDYNYPTSYYNVYGGATAQHPMYGSGPMTGVAAAPAAGFYPYLQFAEGNGPVT 197

Query: 409 ELIPL 395
              PL
Sbjct: 198 GYAPL 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,580,723
Number of Sequences: 28952
Number of extensions: 350835
Number of successful extensions: 913
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)