Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_K20
(898 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069) 36 0.034
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 35 0.10
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_17493| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 33 0.31
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.6
SB_812| Best HMM Match : FH2 (HMM E-Value=0) 31 1.7
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 30 2.2
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30) 30 2.2
SB_31227| Best HMM Match : RIO1 (HMM E-Value=0.13) 30 2.9
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 29 3.9
SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056) 29 3.9
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051) 29 3.9
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 29 3.9
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 29 3.9
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 29 5.1
SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08) 29 5.1
SB_3802| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08) 29 6.7
SB_47949| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 28 8.9
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 38.3 bits (85), Expect = 0.008
Identities = 21/57 (36%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Frame = +2
Query: 215 GGRXPPXXKXPXGXXP-PPPXXGGXXPQMXKTP-XKXXPXKTPXGKKXGXXGKGGPP 379
GG PP P G P PPP GG P P P P G G G PP
Sbjct: 916 GGSVPPPPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGGGAPP 972
Score = 33.5 bits (73), Expect = 0.24
Identities = 18/49 (36%), Positives = 19/49 (38%)
Frame = +2
Query: 191 APXXXPLWGGRXPPXXKXPXGXXPPPPXXGGXXPQMXKTPXKXXPXKTP 337
AP P GG PP P G PPP GG P + P P P
Sbjct: 941 APSQPPPPGGNAPPPPPPPGGSAPPP---GGGAPPLPPPPGGSAPPPPP 986
Score = 33.5 bits (73), Expect = 0.24
Identities = 16/33 (48%), Positives = 16/33 (48%)
Frame = +1
Query: 532 PPPPGGX*GXPXXGGAPPGGXXXPPVXGGXPXP 630
PPPP G P GGAPP PP G P P
Sbjct: 955 PPPPPGGSAPPPGGGAPP---LPPPPGGSAPPP 984
Score = 31.5 bits (68), Expect = 0.96
Identities = 24/75 (32%), Positives = 24/75 (32%), Gaps = 5/75 (6%)
Frame = +1
Query: 532 PPPPGGX*GXPXXGGAPPGG--XXXPPVXGG---XPXPKXGGVKXXXXXXXXXXXXXXXX 696
PPPPGG P PPGG PP GG P P GG
Sbjct: 923 PPPPGGNAPLPP---PPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGGGAPPLPPPPGG 979
Query: 697 XXXXXXXXPXXPPPP 741
P PPPP
Sbjct: 980 SAPPPPPPPPPPPPP 994
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/50 (30%), Positives = 17/50 (34%)
Frame = +2
Query: 686 APXKXXPPGGXPPXXPPPPKXAPXXXXXXXXXXXXXXXXXXXXXGPXPPP 835
AP + PPGG P PPPP + P PPP
Sbjct: 941 APSQPPPPGGNAPPPPPPPGGSAPPPGGGAPPLPPPPGGSAPPPPPPPPP 990
Score = 31.1 bits (67), Expect = 1.3
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 686 APXKXXPPGGXPPXXPPPPKXAP 754
AP PPGG P PPPP P
Sbjct: 970 APPLPPPPGGSAPPPPPPPPPPP 992
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 686 APXKXXPPGGXPPXXPPPP 742
AP PPGG P PPPP
Sbjct: 930 APLPPPPPGGSAPSQPPPP 948
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Frame = +2
Query: 215 GGRXPPXXKXPXGX-XPPPPXXGGXXPQMXKTPXKXXPXKTP 337
GG P P G PPPP GG P P P + P
Sbjct: 905 GGSESPSASPPGGSVPPPPPPPGGNAPLPPPPPGGSAPSQPP 946
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Frame = +2
Query: 191 APXXXPLWGGRXPPXXKXPXGX-XPPPPXXGGXXP 292
AP P GG P P G PPPP GG P
Sbjct: 930 APLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAP 964
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 689 PXKXXPPGGXPPXXPPPP 742
P PPGG P PPPP
Sbjct: 920 PPPPPPPGGNAPLPPPPP 937
>SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)
Length = 135
Score = 36.3 bits (80), Expect = 0.034
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +1
Query: 532 PPPPGGX*GXPXXGGAPPGGXXXPPVXGGXPXPKXG 639
PP PGG P GG PP G P GG P P+ G
Sbjct: 31 PPAPGGY--PPAPGGYPPSGGYGYPPAGGYPPPQPG 64
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = +1
Query: 532 PPPPGGX*GXPXXGGAPPGGXXXPPVXGGXPXPKXGG 642
P PGG P GG PP PP GG P GG
Sbjct: 24 PAAPGGY--PPAPGGYPPAPGGYPP-SGGYGYPPAGG 57
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = +1
Query: 532 PPPPGGX*GXPXXG-GAPPGGXXXPPVXG--GXPXP 630
PP PGG P G G PP G PP G G P P
Sbjct: 38 PPAPGGY--PPSGGYGYPPAGGYPPPQPGYAGGPPP 71
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 34.7 bits (76), Expect = 0.10
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +2
Query: 686 APXKXXPPGGXPPXXPPPPKXAP 754
AP PPGG PP PPPP P
Sbjct: 303 APPPPPPPGGAPPPPPPPPPPPP 325
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +1
Query: 532 PPPPGGX*GXPXXGGAPPGGXXXPPVXGGXPXPKXGG 642
PPPP PPGG PP P P GG
Sbjct: 293 PPPPADGSAPAPPPPPPPGGAPPPPPPPPPPPPGDGG 329
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 33.5 bits (73), Expect = 0.24
Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = -2
Query: 294 WGXXPPXLG-GGGXXPXGXFXXGGSRPPHKGXXXG 193
WG PP G GGG P G GG PP G G
Sbjct: 490 WGQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQGWG 524
Score = 33.5 bits (73), Expect = 0.24
Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = -2
Query: 294 WGXXPPXLG-GGGXXPXGXFXXGGSRPPHKGXXXG 193
WG PP G GGG P G GG PP G G
Sbjct: 523 WGQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQGWG 557
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/39 (43%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Frame = +1
Query: 532 PPPPGGX*GXPXXGGAPPGGXXXPPVXG---GXPXPKXG 639
PPPPG P GA GG PP G G P P G
Sbjct: 579 PPPPGAGQEGPPPPGAGQGGGPPPPGAGQGWGLPPPGSG 617
Score = 30.7 bits (66), Expect = 1.7
Identities = 17/39 (43%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Frame = +1
Query: 532 PPPPGGX*GXPXXGGAPPGGXXXPPVXG---GXPXPKXG 639
PPP G G P GA GG PP G G P P G
Sbjct: 493 PPPGAGQGGGPPPPGAGQGGGPPPPGAGQGWGQPPPGAG 531
Score = 30.7 bits (66), Expect = 1.7
Identities = 17/39 (43%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Frame = +1
Query: 532 PPPPGGX*GXPXXGGAPPGGXXXPPVXG---GXPXPKXG 639
PPP G G P GA GG PP G G P P G
Sbjct: 526 PPPGAGQGGGPPPPGAGQGGGPPPPGAGQGWGQPPPGAG 564
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -2
Query: 294 WGXXPPXLGGGGXXPXGXFXXGGSRPPHKG 205
WG PP G GG P GG PP G
Sbjct: 556 WGQPPPGAGQGGGPPPPGAGQGGPPPPGAG 585
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +1
Query: 532 PPPPGGX*GXPXXGGAPPGGXXXPPV-XGGXPXPKXGG 642
PPPPG G P GA G P GG P P G
Sbjct: 569 PPPPGAGQGGPPPPGAGQEGPPPPGAGQGGGPPPPGAG 606
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/40 (45%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Frame = +1
Query: 532 PPPPG-GX*GXPXXGGAPPGGXXXPP--VXGGXPXPKXGG 642
PPPPG G G P GA G PP GG P P G
Sbjct: 503 PPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAG 542
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/40 (45%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Frame = +1
Query: 532 PPPPG-GX*GXPXXGGAPPGGXXXPP--VXGGXPXPKXGG 642
PPPPG G G P GA G PP GG P P G
Sbjct: 536 PPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAG 575
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Frame = +1
Query: 532 PPPPGG--X*GXPXXGGAPPGGXXXPPVXGGXPXPKXGG 642
PPPPG G P G GG P G P P G
Sbjct: 547 PPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGPPPPGAG 585
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +1
Query: 532 PPPPGGX*GXPXXGGAPPGGXXXPPVXGGXPXPKXGG 642
PPP G G P GA GG P P P G
Sbjct: 559 PPPGAGQGGGPPPPGAGQGGPPPPGAGQEGPPPPGAG 595
>SB_17493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 718
Score = 33.1 bits (72), Expect = 0.31
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 538 PPGGX*GXPXXGGAPPGGXXXPPVXGGXP 624
PPG G P GG PPG PP G P
Sbjct: 302 PPGMEEGPPGTGGGPPGSVGAPPGMGDGP 330
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +1
Query: 541 PGGX*GXPXXGGAPPGGXXXPPVXGGXPXPKXG 639
P G G P G PPG PP GG P G
Sbjct: 290 PSGI-GSPSIGSGPPGMEEGPPGTGGGPPGSVG 321
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 538 PPGGX*GXPXXGGAPPGGXXXPPVXG 615
PPG G P GAPPG PP G
Sbjct: 309 PPGTGGGPPGSVGAPPGMGDGPPGTG 334
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 33.1 bits (72), Expect = 0.31
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = +1
Query: 532 PPPPGGX*GXPXXGGAPPGGXXXPPVXGGXPXP 630
PPPP P GGA P PPV G P P
Sbjct: 346 PPPPSMGMAPPPVGGAAPPPPPPPPVGGPPPPP 378
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Frame = +2
Query: 206 PLWGGRXPPXXKXPXGX-XPPPPXXGGXXPQMXKTPXKXXP 325
P+ G PP P G PPPP G P P P
Sbjct: 357 PVGGAAPPPPPPPPVGGPPPPPPPIEGRPPSSLGNPPPPPP 397
>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 26.6 bits (56), Expect(2) = 1.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 686 APXKXXPPGGXPPXXPPPP 742
AP PP PP PPPP
Sbjct: 101 APPPPPPPPPPPPPPPPPP 119
Score = 22.6 bits (46), Expect(2) = 1.6
Identities = 11/38 (28%), Positives = 11/38 (28%)
Frame = +2
Query: 722 PXXPPPPKXAPXXXXXXXXXXXXXXXXXXXXXGPXPPP 835
P PPPP AP GP P P
Sbjct: 138 PPPPPPPPPAPCMPPCHQTQVVHSVQLHASPPGPPPAP 175
>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1430
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +2
Query: 206 PLWGGRXPPXXKXPXGXXPPPPXXGGXXPQMXKTP 310
P +GG PP PPPP GG P K P
Sbjct: 647 PFFGGIPPPPPGGGMFPPPPPPPPGGGVPGPPKPP 681
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +1
Query: 535 PPPG-GX*GXPXXGGAPPGGXXXPPVXGGXP 624
PPPG G P GG PP G P GG P
Sbjct: 259 PPPGFPPMGMPGMGGMPPPGMPPPMPPGGMP 289
>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
Length = 739
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +1
Query: 532 PPPPGGX*GXPXXGGAPPGGXXXPPVXGGXPXPKXGGVK 648
PPPP G G PP G PP G P + VK
Sbjct: 200 PPPPPGFPGGAPPPPPPPFGAPPPPALNGGPPREYCDVK 238
>SB_31227| Best HMM Match : RIO1 (HMM E-Value=0.13)
Length = 633
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +1
Query: 532 PPPPGGX*GXPXXGGAPPGGXXXPPVXGGXP 624
PPPP G P GGAP G P G P
Sbjct: 264 PPPPAYGGGPPAYGGAPNYGGAPPMGYGAQP 294
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +2
Query: 194 PXXXPLWGGRXPPXXKXPXGXXPPPPXXG 280
P PL GG PP G PPPP G
Sbjct: 678 PPPPPLPGGAAPPPPPPIGGGAPPPPPPG 706
>SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056)
Length = 245
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Frame = +2
Query: 194 PXXXPLWG----GRXPPXXKXPXGXXPPPPXXGGXXP 292
P +WG G PP P G PPPP G P
Sbjct: 201 PGQPGMWGPPPMGGPPPMGGPPGGYPPPPPPPGAGDP 237
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/32 (50%), Positives = 16/32 (50%)
Frame = +1
Query: 535 PPPGGX*GXPXXGGAPPGGXXXPPVXGGXPXP 630
PPP G G P GG PPGG PP G P
Sbjct: 209 PPPMG--GPPPMGG-PPGGYPPPPPPPGAGDP 237
Score = 29.1 bits (62), Expect = 5.1
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 689 PXKXXPPGGXPPXXPPPPKXAP 754
P PPGG PP PPP P
Sbjct: 216 PPMGGPPGGYPPPPPPPGAGDP 237
>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
Length = 421
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Frame = +1
Query: 535 PPPGGX*GXPXXGG----APPGGXXXPPVXGGXP 624
PPPGG G P GG PPGG P P
Sbjct: 237 PPPGGYPGAPPAGGYPGAPPPGGYPGGPPPANYP 270
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Frame = +1
Query: 535 PPPGGX*GXPXXGG--APPGGXXXPPVXGGXPXP 630
PPPG GG PPGG PP G P P
Sbjct: 175 PPPGHYPAPGQPGGYYPPPGGYQQPPPGGYAPPP 208
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Frame = +1
Query: 532 PPPPG----GX*GXPXXGGAPPGGXXXPPVXGGXPXPKXG 639
PPPPG G G P PPG P GG P G
Sbjct: 156 PPPPGTQPPGQGGYPGYNQPPPGHYPAPGQPGGYYPPPGG 195
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/49 (28%), Positives = 14/49 (28%)
Frame = +2
Query: 689 PXKXXPPGGXPPXXPPPPKXAPXXXXXXXXXXXXXXXXXXXXXGPXPPP 835
P PP PP PPPP P P PPP
Sbjct: 370 PPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPP 418
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/49 (28%), Positives = 15/49 (30%)
Frame = +2
Query: 689 PXKXXPPGGXPPXXPPPPKXAPXXXXXXXXXXXXXXXXXXXXXGPXPPP 835
P PP PP PPPP +P P PPP
Sbjct: 368 PPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPP 416
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/50 (28%), Positives = 15/50 (30%)
Frame = +2
Query: 686 APXKXXPPGGXPPXXPPPPKXAPXXXXXXXXXXXXXXXXXXXXXGPXPPP 835
+P PP PP PPPP P P PPP
Sbjct: 364 SPPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPP 413
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 689 PXKXXPPGGXPPXXPPPPKXAP 754
P PP PP PPPP AP
Sbjct: 399 PPPPPPPPPPPPPPPPPPPPAP 420
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 29.5 bits (63), Expect = 3.9
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 704 PPGGXPPXXPPPPKXAP 754
PP G PP PPPP P
Sbjct: 190 PPSGGPPPPPPPPPPPP 206
Score = 28.7 bits (61), Expect = 6.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 704 PPGGXPPXXPPPPKXAP 754
P GG PP PPPP P
Sbjct: 191 PSGGPPPPPPPPPPPPP 207
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/39 (43%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +1
Query: 532 PPPPGGX*GXPXXGGAP-PGGXXXPPVXGGXPXPKXGGV 645
PP P G G P G P P G PP G P GGV
Sbjct: 633 PPSPPGPPGPPGPKGPPGPNGPLGPPGESG-PAGNAGGV 670
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/39 (43%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +1
Query: 532 PPPPGGX*GXPXXGGAP-PGGXXXPPVXGGXPXPKXGGV 645
PP P G G P G P P G PP G P GGV
Sbjct: 718 PPSPPGPPGPPGPNGPPGPNGPLGPPGECG-PAGNAGGV 755
>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
Length = 1052
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = +1
Query: 532 PPPPGGX*GXPXXGGAPPGGXXXPPVXGGXPXPKXGG 642
PPPP P GG PP PP+ GG P P G
Sbjct: 195 PPPP-----PPGPGGIPP---PPPPIRGGVPPPPPMG 223
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +2
Query: 191 APXXXPLWGGRXPPXXKXPXGXXPPPPXXGGXXP 292
+P W PP P G PPPP G P
Sbjct: 184 SPTEDTPWTSVPPPPPPGPGGIPPPPPPIRGGVP 217
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +2
Query: 194 PXXXPLWGGRXPPXXKXPXGXXPPPPXXGG 283
P P GG PP G PPPP GG
Sbjct: 196 PPPPPGPGGIPPPPPPIRGGVPPPPPMGGG 225
>SB_3802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 257
Score = 29.1 bits (62), Expect = 5.1
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 689 PXKXXPPGGXPPXXPPPP 742
P PP G PP PPPP
Sbjct: 169 PNPSPPPSGAPPPPPPPP 186
>SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +1
Query: 532 PPPPGGX*GXPXXGGAPPGGXXXPPVXGGXPXP 630
PPP G P GG P PP+ G P P
Sbjct: 283 PPPLTGGMLPPPFGGHPAAAPPPPPLPAGVPAP 315
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +2
Query: 683 RAPXKXXPPGGXP-PXXPPPPKXAP 754
R P + PPG P P PPPP AP
Sbjct: 311 RPPTRIPPPGMGPPPRIPPPPIRAP 335
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +1
Query: 532 PPPPGGX*GXPXXGGAPPGGXXXPPVXGGXPXP 630
PPPP P APP PP P P
Sbjct: 65 PPPPAAAPAAPPPPAAPPAAPPPPPPLPAPPPP 97
>SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08)
Length = 593
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +2
Query: 683 RAPXKXXPPGGXPPXXPPPPKXAP 754
+AP PP PP PPPP P
Sbjct: 462 QAPPPPPPPPPPPPPPPPPPPPPP 485
>SB_47949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +1
Query: 535 PPPGGX*GXPXXGGAPPGGXXXPPVXGGXPXPKXGGVK 648
PPPGG G PP G PP P P GG++
Sbjct: 223 PPPGGM----PPGRMPPQGLPFPPPGPIPPPPGAGGMR 256
>SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 704 PPGGXPPXXPPPPKXAP 754
PP G PP PPPP P
Sbjct: 193 PPFGGPPSAPPPPPAPP 209
>SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 686 APXKXXPPGGXPPXXPPPP 742
AP PP PP PPPP
Sbjct: 230 APAPPPPPAAAPPPPPPPP 248
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = +1
Query: 532 PPPPGGX*GXPXXG-GAPPGGXXXPPVXGGXPXP 630
PPPPGG G P G P PP G P P
Sbjct: 459 PPPPGGMRGMPPPPMGMYPPPRGFPPPPFGPPPP 492
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 689 PXKXXPPGGXPPXXPPPPKXAP 754
P PP PP PPPP +P
Sbjct: 216 PPPPPPPSPSPPRPPPPPPPSP 237
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,895,188
Number of Sequences: 59808
Number of extensions: 168171
Number of successful extensions: 1429
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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