Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_K19
(906 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048 111 6e-25
06_03_0811 + 24830496-24831194 111 7e-25
02_01_0691 - 5167260-5167937 107 2e-23
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911... 86 3e-17
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 43 4e-04
08_02_1402 - 26786011-26786128,26786263-26786516,26787505-267877... 31 0.95
06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518 31 0.95
06_01_0671 - 4899611-4899829,4900870-4901448 30 2.9
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 29 3.8
08_01_0627 + 5451140-5451839,5452635-5452662,5452730-5452786,545... 29 3.8
06_01_0861 + 6527279-6527582,6527619-6527719,6527817-6528042,652... 29 3.8
06_03_1406 - 29949367-29949556,29949753-29949837,29950625-299507... 28 8.9
>01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048
Length = 162
Score = 111 bits (268), Expect = 6e-25
Identities = 55/113 (48%), Positives = 73/113 (64%), Gaps = 3/113 (2%)
Frame = +2
Query: 260 MAPIKVGDQLPAADL--FE-DSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYV 430
MAP+ VGD LP L F+ + +V++ L AGKKVVLF VPGAFTP CS H+PG++
Sbjct: 1 MAPVAVGDTLPDGQLGWFDGEDKLQQVSVHGLAAGKKVVLFGVPGAFTPTCSNQHVPGFI 60
Query: 431 QNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKGSG 589
A++LK+ GV +I+ VSVNDP+VM AW + V+ LAD G + K G
Sbjct: 61 NQAEQLKAKGVDDILLVSVNDPFVMKAWAKSYPENKHVKFLADGLGTYTKALG 113
>06_03_0811 + 24830496-24831194
Length = 232
Score = 111 bits (267), Expect = 7e-25
Identities = 59/126 (46%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Frame = +2
Query: 224 ASARALHISQLSMAPIKVGDQLPAADL-FEDSPANK---VNICELTAGKKVVLFAVPGAF 391
A RA+ S + A I VGD+LP A L + DSP + V + +LTAGKKVVLFAVPGAF
Sbjct: 56 APRRAVSASAPAAATIAVGDKLPDATLSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAF 115
Query: 392 TPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGN 571
TP C++ H+PG+V A +L++ GV + CVSVND +VM AW +V +L+D +G
Sbjct: 116 TPTCTQKHVPGFVAKAGELRAKGVDAVACVSVNDAFVMRAWKESLGVGDEVLLLSDGNGE 175
Query: 572 FIKGSG 589
+ G
Sbjct: 176 LARAMG 181
>02_01_0691 - 5167260-5167937
Length = 225
Score = 107 bits (256), Expect = 2e-23
Identities = 55/109 (50%), Positives = 71/109 (65%), Gaps = 4/109 (3%)
Frame = +2
Query: 200 GITAFTNRASARALHISQLSMAPIKVGDQLPAADLFEDSPAN----KVNICELTAGKKVV 367
G+ A RA+ R+ + +A I VGD+LP A L PA+ V + ELTAG+K V
Sbjct: 40 GVRAAGARAARRSAASASTVVATIAVGDKLPDATLSYFDPADGELKTVTVAELTAGRKAV 99
Query: 368 LFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAW 514
LFAVPGAFTP CS+ HLPG+++ A +L + GV I CVSVND +VM AW
Sbjct: 100 LFAVPGAFTPTCSQKHLPGFIEKAGELHAKGVDAIACVSVNDAFVMRAW 148
>01_01_1148 -
9113728-9113835,9113952-9114035,9114831-9114992,
9115120-9115224,9115584-9116216,9117412-9117496,
9118426-9118520,9119083-9119241,9119968-9119997,
9120100-9120306
Length = 555
Score = 86.2 bits (204), Expect = 3e-17
Identities = 36/76 (47%), Positives = 48/76 (63%)
Frame = +2
Query: 353 GKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNT 532
GKKVV+F +PGA+T CS+ H+P Y N DKLK+ GV ++CVSVNDPY + W +
Sbjct: 70 GKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDPYALNGWAEKLQA 129
Query: 533 KGKVRMLADPSGNFIK 580
K + D G+F K
Sbjct: 130 KDAIEFYGDFDGSFHK 145
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 42.7 bits (96), Expect = 4e-04
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Frame = +2
Query: 218 NRASARALHISQLSMAPIKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTP 397
+ SA+A S ++M + +GD +P +L DS K+ I + V+LF+ PG FTP
Sbjct: 23 HETSAKAAQ-SFVAMPGLTIGDTVPNLEL--DSTHGKIRIHDFVGDTYVILFSHPGDFTP 79
Query: 398 GCSK--THLPGYVQNADKLKSDGVAEIVC--VSVNDPYVMAAWGAQHNTKGKVRMLADPS 565
C+ + GY + DK + + I C V + ++ + + ++ADPS
Sbjct: 80 VCTTELAAMAGYAKEFDK-RGVKLLGISCDDVQSHKDWIKDIEAYKPGNRVTYPIMADPS 138
Query: 566 GNFIK 580
IK
Sbjct: 139 REAIK 143
>08_02_1402 -
26786011-26786128,26786263-26786516,26787505-26787732,
26788920-26789759
Length = 479
Score = 31.5 bits (68), Expect = 0.95
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = -1
Query: 717 RRENKTGQCHRAPHSDLGPCCQR*PSRTFWSGNLRAAADWCPGPEP 580
RRE +T H PHSDL P R P RT + + R P P P
Sbjct: 187 RREAETAHPHTQPHSDLSP---RTPRRTSAAASGRLQEKQAPPPLP 229
>06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518
Length = 524
Score = 31.5 bits (68), Expect = 0.95
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Frame = +2
Query: 308 EDSPANKVNICELTAG------KKVVLFAVP---GAFTPGCSKTHLPGYVQNADKLKSDG 460
E P + +CELT +K + F P GAF K P Y + D L G
Sbjct: 145 EGFPYARPPVCELTGDIRISPKEKTMFFVNPSSAGAFDGNGEKKIRP-YARKDDFLLP-G 202
Query: 461 VAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNF 574
V E++ SV+ P + A HN V +A + NF
Sbjct: 203 VVEVIIKSVSSPAIAPACTRTHNVPAVVFSVAGYTDNF 240
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 29.9 bits (64), Expect = 2.9
Identities = 22/79 (27%), Positives = 37/79 (46%)
Frame = +2
Query: 257 SMAPIKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQN 436
S + G P L D V++ + G+ VV++ P TPGC+K + +
Sbjct: 114 SSVQVSKGSAAPNFTL-RDQDGRAVSLSKFK-GRPVVVYFYPADETPGCTK-QACAFRDS 170
Query: 437 ADKLKSDGVAEIVCVSVND 493
+K K G AE++ +S +D
Sbjct: 171 YEKFKKAG-AEVIGISGDD 188
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 609 PLGGFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 725
PL G S F+ +I S +Q +V+ DGT SC + D I
Sbjct: 456 PLEGVGSAYFNELINRSMIQPADVQYDGTVQSCRVHDMI 494
>08_01_0627 +
5451140-5451839,5452635-5452662,5452730-5452786,
5453205-5453874
Length = 484
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -2
Query: 440 LRSVRIPASVF*NIPG*RRPAPQIIQPSFPPSTHKYSPY*RENLRINQQQAADPRP 273
LR + A++ P +P PQ+ PSFP +T S R R + DP+P
Sbjct: 13 LRDAQSAAALSNPNPPEPQPQPQLATPSFPTTTDTASRRRRRRRRRGRGNRHDPQP 68
>06_01_0861 +
6527279-6527582,6527619-6527719,6527817-6528042,
6528132-6528475,6528624-6528989,6529080-6529347,
6529479-6529696
Length = 608
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 374 AVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAW-GAQHNT 532
A+ G P C H+ + K +S V V + YV+A W G+ H++
Sbjct: 140 ALDGTHIPACVPMHMQDRFRGRKKFQSQNVLAAVDFDLRFLYVLAGWEGSAHDS 193
>06_03_1406 -
29949367-29949556,29949753-29949837,29950625-29950791,
29951232-29952049
Length = 419
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 245 ISQLSMAPIKVGDQLPAADLFEDSPANKVN-ICELTAGKKVVLFAVPGA 388
+S +AP+++G P++ + SPA V+ + VL +PGA
Sbjct: 32 LSMADLAPVQIGPSSPSSPMSPASPATPVDAYANAPPPSEDVLLRIPGA 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,418,241
Number of Sequences: 37544
Number of extensions: 538905
Number of successful extensions: 1353
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1350
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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