Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K19
         (906 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)          92   6e-19
SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   3e-08
SB_13381| Best HMM Match : Asparaginase (HMM E-Value=6e-09)            30   3.0  
SB_42557| Best HMM Match : GAD (HMM E-Value=1.4)                       30   3.0  
SB_19150| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.8  
SB_20030| Best HMM Match : NTR (HMM E-Value=0.6)                       29   6.8  

>SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)
          Length = 246

 Score = 91.9 bits (218), Expect = 6e-19
 Identities = 48/112 (42%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
 Frame = +2

Query: 260 MAPIKVGDQLPAA--DLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQ 433
           M P + G ++P     + E +   KV+   L AGK VVLFA+PGAFTP CS THLP Y +
Sbjct: 1   MLPNREGQKVPKVVFPVREGNDWVKVSTDTLFAGKTVVLFALPGAFTPTCSSTHLPRYNE 60

Query: 434 NADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKGSG 589
            A   K+ GV +I+C+SVND +VM +W A    +  +  + D +G F +G G
Sbjct: 61  LAPVFKAQGVDDIICLSVNDTFVMNSWAADQKAE-NITFIPDGNGEFSEGMG 111


>SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 26/50 (52%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
 Frame = +3

Query: 579 RALDLGTNLPP-LGGFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 725
           +A+DL  +  P LG  RSKR++M++ D  V+ L+VEPDGTGL+CSL++ I
Sbjct: 84  KAVDLELDATPFLGNIRSKRYAMLVEDGVVKQLHVEPDGTGLTCSLSNSI 133



 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 16/32 (50%), Positives = 24/32 (75%)
 Frame = +2

Query: 446 LKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGK 541
           +KS GV  + C++VNDP+VM+AWG  +  +GK
Sbjct: 53  IKSKGVDVVACIAVNDPFVMSAWGEANGCQGK 84


>SB_13381| Best HMM Match : Asparaginase (HMM E-Value=6e-09)
          Length = 231

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +2

Query: 170 MFLTGSSIIRGITAFTNRASARALHISQLSMAPIKVGDQLPAADLFEDSPANKVNICELT 349
           M   G  ++ G    +  ASA +     LS   I  G QLP  DL  D+  N +   ++ 
Sbjct: 18  MRFDGFVVLHGSDTMSYSASALSFMFENLSKPIIFTGSQLPIGDLRTDAKENLITAIQIA 77

Query: 350 A 352
           +
Sbjct: 78  S 78


>SB_42557| Best HMM Match : GAD (HMM E-Value=1.4)
          Length = 366

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 386 AFTPGCSKTHLPGYVQNADKLKSDGVAE-IVCVSVN 490
           A  PG S+  L  + + A  +KSD +A+ IVCV +N
Sbjct: 84  ASIPGFSQEQLQAWARRAKAVKSDSLADAIVCVQLN 119


>SB_19150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 579 RALDLGTNLPPLGGFRSKRFSMVIVDSKVQDL 674
           RA+DL TN+  +G  R+  F +  VD +V+D+
Sbjct: 81  RAVDLSTNMIEIGKQRAAEFEIDKVDFEVEDI 112


>SB_20030| Best HMM Match : NTR (HMM E-Value=0.6)
          Length = 178

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 452 ISVYLRSVRIPASVF*NIPG*RRPAPQII 366
           +SVY  S  +P +VF  +PG R P P ++
Sbjct: 24  LSVYKASELLPRTVFIRVPGGRCPCPHLL 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,397,886
Number of Sequences: 59808
Number of extensions: 584447
Number of successful extensions: 1183
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2609867019
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)