Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_K19
(906 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016448-16|AAM45377.1| 394|Caenorhabditis elegans Atg (autopha... 30 2.0
AF016448-15|AAB65961.1| 412|Caenorhabditis elegans Atg (autopha... 30 2.0
AF016654-4|AAB66023.1| 291|Caenorhabditis elegans Hypothetical ... 29 3.5
AC006663-5|AAY43999.1| 490|Caenorhabditis elegans Hypothetical ... 29 3.5
U64848-7|ABS83846.1| 144|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr... 29 6.0
U42848-2|AAA83608.2| 315|Caenorhabditis elegans Hypothetical pr... 29 6.0
AF125448-5|AAD12810.1| 188|Caenorhabditis elegans Hypothetical ... 28 8.0
AF003740-5|AAL08031.1| 195|Caenorhabditis elegans Hypothetical ... 28 8.0
>AF016448-16|AAM45377.1| 394|Caenorhabditis elegans Atg (autophagy)
related protein18, isoform b protein.
Length = 394
Score = 30.3 bits (65), Expect = 2.0
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Frame = +2
Query: 311 DSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAE--IVCVS 484
D+P NK+ + +LT+ L A PG+ G HL + N + + E I C+
Sbjct: 139 DTPTNKLGVLDLTSNPGNALIAYPGSTDTG--SVHLFDAI-NLSSVSTFNAHEGTIACLK 195
Query: 485 VNDPYVMAAWGAQHNTKGKV-RMLADPSGN 571
N M A +TKG V R+ + P+G+
Sbjct: 196 FNQEGNMIATA---STKGTVIRVYSVPNGH 222
>AF016448-15|AAB65961.1| 412|Caenorhabditis elegans Atg (autophagy)
related protein18, isoform a protein.
Length = 412
Score = 30.3 bits (65), Expect = 2.0
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Frame = +2
Query: 311 DSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAE--IVCVS 484
D+P NK+ + +LT+ L A PG+ G HL + N + + E I C+
Sbjct: 139 DTPTNKLGVLDLTSNPGNALIAYPGSTDTG--SVHLFDAI-NLSSVSTFNAHEGTIACLK 195
Query: 485 VNDPYVMAAWGAQHNTKGKV-RMLADPSGN 571
N M A +TKG V R+ + P+G+
Sbjct: 196 FNQEGNMIATA---STKGTVIRVYSVPNGH 222
>AF016654-4|AAB66023.1| 291|Caenorhabditis elegans Hypothetical
protein C17A2.7 protein.
Length = 291
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +2
Query: 425 YVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLAD-PSGNFIKGSGPGHQ 601
Y+ D L SD + +N P + G H+T + ++L P G+ G+ P H+
Sbjct: 83 YLPILDFLNSDEAKRHILPKMNQPSTIVTLGIGHDTGAEEKLLQQLPEGSEFFGADPMHE 142
>AC006663-5|AAY43999.1| 490|Caenorhabditis elegans Hypothetical
protein H24K24.2 protein.
Length = 490
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Frame = +2
Query: 173 FLTGSSIIRGITAFTNRASARALHISQLSMA-------PIKVGDQLPAADLF 307
F+ G I+R + +F N S LH +++M P K+ + LPA F
Sbjct: 79 FMNGYDIVRFLESFLNEESRNVLHSLEITMESPFAKEWPAKINNMLPALKCF 130
>U64848-7|ABS83846.1| 144|Caenorhabditis elegans Hypothetical
protein C50E3.11 protein.
Length = 144
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 742 CVISHCKINNMKTKLGDFTRICY 810
C++ C + N K KL DF ICY
Sbjct: 82 CILQICLVPNAKKKLIDFEGICY 104
>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical
protein F01G4.3 protein.
Length = 1266
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 396 GVKAPGTANNTTFFPAVNSQIFTLLAGESSNKSAAGS*SPTL 271
G G+ N F P ++ LLAGE++ KS +G S L
Sbjct: 104 GNSIKGSPGNVPFLPGFLEELDDLLAGETTAKSTSGEESKFL 145
>U42848-2|AAA83608.2| 315|Caenorhabditis elegans Hypothetical
protein C31H1.5 protein.
Length = 315
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -1
Query: 456 SDFSLSAFCTYPGKCVLEHPGVKAPGTANNTTFFPAVN 343
+DF A C+ K EH G + P T F PA N
Sbjct: 113 ADFVTDAACSLVRKFGHEHYGTRTPDNRELTAFHPATN 150
>AF125448-5|AAD12810.1| 188|Caenorhabditis elegans Hypothetical
protein H14E04.3 protein.
Length = 188
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 475 HYFSNSIRFQFICVLYVSRQVCFRTSRGEGARHRK 371
H+F+ I FICV VS + RT+R G +++K
Sbjct: 129 HFFNIPISLYFICVFLVSSKTHKRTTR-SGRKNKK 162
>AF003740-5|AAL08031.1| 195|Caenorhabditis elegans Hypothetical
protein C41D11.9 protein.
Length = 195
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 501 TYGSLTDTHTISATPSDFSLSAFCTYPGKC 412
T GS++ T + + D S CT+PG C
Sbjct: 17 TIGSISGTKDVKSKNCDGSAGLTCTFPGDC 46
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,436,506
Number of Sequences: 27780
Number of extensions: 431598
Number of successful extensions: 1045
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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