Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K16
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr...   111   1e-25
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    30   0.51 
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    29   0.67 
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    29   1.2  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     27   2.7  
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    27   2.7  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    26   6.3  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   8.3  
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   8.3  
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo...    26   8.3  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   8.3  
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     26   8.3  

>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 179

 Score =  111 bits (267), Expect = 1e-25
 Identities = 54/121 (44%), Positives = 76/121 (62%)
 Frame = +2

Query: 200 ETIYDYLRTIRDPEKPNTLEDLKVVYEEGIFVKEPTADKVPVLRVEYNPTVPHCSLATLI 379
           + IYD L  I DPE P TL  L VV  E I V +   +    + V   PT+PHCS+ TLI
Sbjct: 57  QEIYDLLAKINDPEHPLTLAQLSVVKLEDIEVVD-NVEGDSYITVHITPTIPHCSMCTLI 115

Query: 380 GLCIRIKILRSIHHPVKLDIFIKKGAHTTEDEINKQINDKERIAAAMENPNLRNLVENCI 559
           GLCIR+++ R +     +D+ +KKG H +E ++NKQ+NDKER+AAA EN  L +++   +
Sbjct: 116 GLCIRVRLERCLPPRFHVDVKVKKGTHASESQVNKQLNDKERVAAACENEQLLSVLNGMM 175

Query: 560 A 562
           A
Sbjct: 176 A 176


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -1

Query: 319 HFICSWFLHKDSFLVHDLQVFKRIWLFGVSNCPQIVIYCLSQLIL 185
           +F  SW +   +  V D+ V  R++ F +S+ P  V+Y  +Q++L
Sbjct: 189 YFALSWLITWFAHDVSDISVVCRLFDFFISSHPLTVVYTCAQVVL 233


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -1

Query: 634 SVIFENATSGAILENCCWVDLLLFGYAVFHQV 539
           S I+   TSG  L    WV L LFG+A F +V
Sbjct: 215 SDIWNEYTSGNWLMAFIWVGLFLFGFACFREV 246


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 179 KDENELRET-IYDYLRTIRDPEKPNTLEDLKVVYEEGIFVKEPTADKVPVLRVEYN 343
           K + + RE  IY Y ++ R   + NTLED+K      +   EP  D   V +V +N
Sbjct: 65  KFKQDFRERWIYKYTKSGRTSIRFNTLEDIKCSISLLVLFAEPDIDLPFVSQVAHN 120


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 188 NELRETIYDYLRTIRDPEKPNTLE 259
           +EL+ET++DYL  +R   +P  LE
Sbjct: 278 DELKETMWDYLNLVRVYTRPRGLE 301


>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -1

Query: 691 ITCTPLYAKNFVNFVNSFLSVIFENATSGAILENCCWVDLLLFGYAVFHQVS*IGILHCS 512
           IT T + A  F N +  +      + TSG  ++       +++GY     V   GIL  +
Sbjct: 93  ITTTVIQALFFSNSITEYARYATGHGTSGYSIKKLISAASIIYGYTTIIAVLLWGILVWN 152

Query: 511 -CNPLLV 494
            CNP L+
Sbjct: 153 KCNPKLL 159


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
            Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 338  TPHVKRALYLQLV-PSQRFLPRTRPSSLQAYLAF 240
            TP    + Y ++V PS+ F P   P+SLQA L F
Sbjct: 984  TPLRPNSQYQEIVRPSRHFNPLKVPASLQAQLPF 1017


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
 Frame = +2

Query: 119 VEVAKPAYMDKSATLQELGYKDENELRETIYDYLRTIRDPEKPNTLEDLK----VVYEEG 286
           V+ +KP  +      Q  GY D  + R   + +  +  DPE    +  L          G
Sbjct: 573 VKDSKPESLGIDTVKQYTGYLDVEDDRHLFFWFFESRNDPENDPVVLWLNGGPGCSSLTG 632

Query: 287 IFVK-EPTADKVPVLRVEYNP 346
           +F++  P++  +  L+ EYNP
Sbjct: 633 LFMELGPSSINIETLKPEYNP 653


>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 203 TIYDYLRTIRDPEKPNTLEDLKV 271
           +I   +  IRDPE  NT+ED  V
Sbjct: 6   SISSKINRIRDPESDNTIEDTHV 28


>SPBC19F8.02 |||nuclear distribution protein NUDC
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 564 KRSKSTQQQFSKMAPEVAFSNITDK 638
           ++ K   Q F K  PE+ FSN+ D+
Sbjct: 141 QKRKDVLQNFMKQHPELDFSNVRDQ 165


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 84  PNYL*TTLQNSQWRSLSPHIWTKVLHY 164
           PNYL + L++  W+ L   I +  +HY
Sbjct: 135 PNYLISILESKNWQLLLEIIGSDAMHY 161


>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 761 INQSVSDVFGYC*VLFNSFSRLNYNLYSF 675
           +NQS++    Y   LFNSFS++ + L+ F
Sbjct: 123 LNQSLAAAIAYNWSLFNSFSKIQF-LFGF 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,510,135
Number of Sequences: 5004
Number of extensions: 74299
Number of successful extensions: 213
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)