Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K16
         (892 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17381| Best HMM Match : No HMM Matches (HMM E-Value=.)             113   1e-25
SB_41741| Best HMM Match : DUF59 (HMM E-Value=6.1e-08)                 65   6e-11
SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)                33   0.23 
SB_34447| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_54430| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_43539| Best HMM Match : H_PPase (HMM E-Value=4.5e-06)               30   2.9  
SB_42611| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_38239| Best HMM Match : YopE (HMM E-Value=7.2)                      29   3.8  
SB_27352| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_12852| Best HMM Match : Mic1 (HMM E-Value=0.32)                     29   3.8  
SB_9628| Best HMM Match : SOCS_box (HMM E-Value=6.3e-11)               29   6.7  
SB_44556| Best HMM Match : RVP (HMM E-Value=2.3)                       28   8.8  

>SB_17381| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score =  113 bits (273), Expect = 1e-25
 Identities = 53/118 (44%), Positives = 83/118 (70%)
 Frame = +2

Query: 218 LRTIRDPEKPNTLEDLKVVYEEGIFVKEPTADKVPVLRVEYNPTVPHCSLATLIGLCIRI 397
           +R+I DPE P TLE+L VV +  I V    +D    ++V++ PT+PHCS+ATLIGL IR+
Sbjct: 2   IRSINDPEHPLTLEELNVVEQALIDV----SDDESYVKVQFTPTIPHCSMATLIGLAIRV 57

Query: 398 KILRSIHHPVKLDIFIKKGAHTTEDEINKQINDKERIAAAMENPNLRNLVENCIAEEE 571
           ++LRS+    K+D+ I  G H +E  +NKQ+ DKER+AAA+EN +L ++++ C+  ++
Sbjct: 58  RLLRSLPDRFKVDVKITPGTHQSEIAVNKQLADKERVAAALENNHLLDVIDQCLVSKK 115


>SB_41741| Best HMM Match : DUF59 (HMM E-Value=6.1e-08)
          Length = 476

 Score = 65.3 bits (152), Expect = 6e-11
 Identities = 35/71 (49%), Positives = 49/71 (69%)
 Frame = +2

Query: 182 DENELRETIYDYLRTIRDPEKPNTLEDLKVVYEEGIFVKEPTADKVPVLRVEYNPTVPHC 361
           D+ + RE I+D +R+I DPE P TLE+L VV +  I V    +D    ++V++ PT+PHC
Sbjct: 411 DKIDDRE-IFDMIRSINDPEHPLTLEELNVVEQALIDV----SDDESYVKVQFTPTIPHC 465

Query: 362 SLATLIGLCIR 394
           S+ATLIGL IR
Sbjct: 466 SMATLIGLAIR 476


>SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
          Length = 300

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 17/42 (40%), Positives = 27/42 (64%)
 Frame = -1

Query: 604 AILENCCWVDLLLFGYAVFHQVS*IGILHCSCNPLLVVDLLI 479
           A++  CC+VD+LL  YAV   +S + +L C    +L VD+L+
Sbjct: 196 AVMSICCYVDMLLCRYAV---MSCVDMLLCRYAAMLCVDMLL 234


>SB_34447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 19/69 (27%), Positives = 34/69 (49%)
 Frame = -3

Query: 377 LAWPANNGALLDYTPHVKRALYLQLVPSQRFLPRTRPSSLQAYLAFRGLELSSNSHILSL 198
           L W  N  AL+++T    R  +L+   S  ++P +    L A L  + +E+ + SH++ L
Sbjct: 44  LVWLGNQSALVNHTLLQSRYSHLKTKVSILYIPNSIKDILLASLN-QPMEMGAFSHLVLL 102

Query: 197 STHSRLCSR 171
                +C R
Sbjct: 103 VVDESVCGR 111


>SB_54430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
 Frame = -1

Query: 685 CTPLYAKNFVNFVNSFLSVIFENA-----TSGAILENCCWVDLLLFGYAVFHQVS--*IG 527
           CTP++   +  FV  +   +FE A      +G + EN  +V    F YA FH+++    G
Sbjct: 193 CTPVFVFEYAGFVFEYAGFVFEYAGFVFEYAGFVFENAGFV----FEYAEFHKMNTKLHG 248

Query: 526 ILHC 515
           I++C
Sbjct: 249 IINC 252


>SB_43539| Best HMM Match : H_PPase (HMM E-Value=4.5e-06)
          Length = 177

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 455 AHTTEDEINKQINDKERIAAAMENPNLRNLVE 550
           AH   DE+ KQI ++  I    E PN +N ++
Sbjct: 132 AHGMIDEVRKQIKERPGIIDGTEKPNYKNCIQ 163


>SB_42611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +2

Query: 122 EVAKPAYMDKSATLQELGYKDENELRETIYDYLRTIRDPEKPNTL 256
           EV++ A++  S+T + +  ++ENE +E I D L T  + +  NT+
Sbjct: 553 EVSEQAHVTASSTKESVPEENENEEKEGIDDDLETHCESDTTNTI 597


>SB_38239| Best HMM Match : YopE (HMM E-Value=7.2)
          Length = 247

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +2

Query: 122 EVAKPAYMDKSATLQELGYKDENELRETIYDYLRTIRDPEKPNTL 256
           EV++ A++  S+T + +  ++ENE +E I D L T  + +  NT+
Sbjct: 116 EVSEQAHVTASSTKESVPEENENEEKEGIDDDLETHCESDTTNTI 160


>SB_27352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +2

Query: 122 EVAKPAYMDKSATLQELGYKDENELRETIYDYLRTIRDPEKPNTL 256
           EV++ A++  S+T + +  ++ENE +E I D L T  + +  NT+
Sbjct: 116 EVSEQAHVTASSTKESVPEENENEEKEGIDDDLETHCESDTTNTI 160


>SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1853

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +2

Query: 122 EVAKPAYMDKSATLQELGYKDENELRETIYDYLRTIRDPEKPNTL 256
           EV++ A++  S+T + +  ++ENE +E I D L T  + +  NT+
Sbjct: 526 EVSEQAHVTASSTKESVPEENENEEKEGIDDDLETHCESDTTNTI 570


>SB_12852| Best HMM Match : Mic1 (HMM E-Value=0.32)
          Length = 1077

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 24/95 (25%), Positives = 37/95 (38%)
 Frame = +2

Query: 203 TIYDYLRTIRDPEKPNTLEDLKVVYEEGIFVKEPTADKVPVLRVEYNPTVPHCSLATLIG 382
           T+ D++RT R PEK   LE  K    + +    P         +     V   + ATL G
Sbjct: 387 TVDDFIRTGRIPEKDEILEKAKEYIPDLMITTLPGTSSQTTKAISI--VVTESTRATLYG 444

Query: 383 LCIRIKILRSIHHPVKLDIFIKKGAHTTEDEINKQ 487
               + +L+    PV L  F+   A      + K+
Sbjct: 445 NGGVVDVLKETTVPVALSEFVAPNASLDTKRLIKE 479


>SB_9628| Best HMM Match : SOCS_box (HMM E-Value=6.3e-11)
          Length = 148

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 332 HVKRALYLQLVPSQRFLPRTRPSSLQAYLAFRGLEL 225
           H+ R +  QLVP+ R      P SL+AYL +  L L
Sbjct: 99  HLCRIVINQLVPANRIHELPLPKSLKAYLLYTFLNL 134


>SB_44556| Best HMM Match : RVP (HMM E-Value=2.3)
          Length = 305

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +3

Query: 546 WKTA*PKRSKSTQQQFSKMAPEVAFSNITDKNEFTKFTKFLAYKGVQVIVESRK 707
           WK A   ++ S + + SK+ P  + +N +D + F    KFL     + ++++R+
Sbjct: 111 WKPAPNSKTTSRKSRSSKVCPLCSQANRSDTHHFLSECKFLPDSDRRYMIKARQ 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,348,586
Number of Sequences: 59808
Number of extensions: 537243
Number of successful extensions: 1558
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1555
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)