Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_K16
(892 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93382-8|CAB07619.1| 160|Caenorhabditis elegans Hypothetical pr... 132 3e-31
AL031254-1|CAA20282.1| 395|Caenorhabditis elegans Hypothetical ... 31 1.1
AF016664-1|AAB66070.2| 324|Caenorhabditis elegans Serpentine re... 30 2.6
Z81568-11|CAB04593.1| 681|Caenorhabditis elegans Hypothetical p... 29 4.5
U28971-9|AAK68669.1| 90|Caenorhabditis elegans Hypothetical pr... 29 4.5
AC006830-1|AAK68610.3| 802|Caenorhabditis elegans Hypothetical ... 29 4.5
Z81453-3|CAB03791.1| 480|Caenorhabditis elegans Hypothetical pr... 29 5.9
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr... 29 5.9
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr... 29 5.9
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z66567-8|CAA91494.1| 402|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z66561-9|CAA91462.1| 402|Caenorhabditis elegans Hypothetical pr... 28 7.8
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo... 28 7.8
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo... 28 7.8
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo... 28 7.8
>Z93382-8|CAB07619.1| 160|Caenorhabditis elegans Hypothetical
protein F45G2.10 protein.
Length = 160
Score = 132 bits (319), Expect = 3e-31
Identities = 66/148 (44%), Positives = 96/148 (64%)
Frame = +2
Query: 128 AKPAYMDKSATLQELGYKDENELRETIYDYLRTIRDPEKPNTLEDLKVVYEEGIFVKEPT 307
+KP + + T ++ +D + E I+D +R I DPE P TLE L VV EE +K
Sbjct: 16 SKPRHRPVTGTERDESVEDPIDSWE-IFDLIRDINDPEHPYTLEQLNVVQEE--LIKVFI 72
Query: 308 ADKVPVLRVEYNPTVPHCSLATLIGLCIRIKILRSIHHPVKLDIFIKKGAHTTEDEINKQ 487
++ ++V + PT+PHCS+ATLIGL IR+K+LRS+H VK+ + I G+H+TE+ IN+Q
Sbjct: 73 DEEETFVKVNFTPTIPHCSMATLIGLAIRVKLLRSLHPKVKVSVSITPGSHSTEESINRQ 132
Query: 488 INDKERIAAAMENPNLRNLVENCIAEEE 571
+ DKER+AAAMEN L + V C+ E
Sbjct: 133 LADKERVAAAMENQGLMHAVNECLRVPE 160
>AL031254-1|CAA20282.1| 395|Caenorhabditis elegans Hypothetical
protein 4R79.2 protein.
Length = 395
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/88 (28%), Positives = 36/88 (40%)
Frame = +2
Query: 122 EVAKPAYMDKSATLQELGYKDENELRETIYDYLRTIRDPEKPNTLEDLKVVYEEGIFVKE 301
EV P +DKS L+E +DE E YL LE++K YE+ E
Sbjct: 89 EVEIPCILDKSQYLEESSLEDEMREIEQNKSYLDDPLTKILKKELEEIK-NYEDFQVRNE 147
Query: 302 PTADKVPVLRVEYNPTVPHCSLATLIGL 385
D + + + Y P P S+ + L
Sbjct: 148 QVLDNIIIKKPLYRPIQPEQSIPKVSSL 175
>AF016664-1|AAB66070.2| 324|Caenorhabditis elegans Serpentine
receptor, class i protein77 protein.
Length = 324
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = -1
Query: 298 LHKDSFLVHDLQVFKRIWLFGVSNCPQIVIYCLSQLILVFVAELL*CSTFVHIC 137
L ++ L++ +V+ + +L SN P V+Y SQ ++F+ L ++F +C
Sbjct: 157 LSREDALIYIKKVYPKGYL-QFSNLPNFVVYMKSQNTIIFLVTLFFAASFGFLC 209
>Z81568-11|CAB04593.1| 681|Caenorhabditis elegans Hypothetical
protein K08E3.6 protein.
Length = 681
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/62 (22%), Positives = 32/62 (51%)
Frame = +2
Query: 149 KSATLQELGYKDENELRETIYDYLRTIRDPEKPNTLEDLKVVYEEGIFVKEPTADKVPVL 328
+S T+ +G D + +T+ +LR ++DP P T +++ ++ +P ++ +
Sbjct: 475 RSKTVPNVGLHDVEVITDTLKRFLRDLKDPLIPRTSRQ-ELIVAANLYSTDPDNGRLALN 533
Query: 329 RV 334
RV
Sbjct: 534 RV 535
>U28971-9|AAK68669.1| 90|Caenorhabditis elegans Hypothetical
protein B0244.11 protein.
Length = 90
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 766 CK*TNQCLTSLVTV-RFYLTPFLDSTITCTPLYAKNFVNFVNSFLSVIF 623
CK N C SL+ RF+ P L + + PL+ FV F++ S F
Sbjct: 4 CKCANHCFLSLLLASRFHFKPLLRNRVLSLPLF--QFVCFISGSSSSSF 50
>AC006830-1|AAK68610.3| 802|Caenorhabditis elegans Hypothetical
protein ZK105.3 protein.
Length = 802
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 709 PFLDSTITCTPLYAKNFVNFVNSFLSVIF 623
P+ STI C Y +NF N V++F S IF
Sbjct: 519 PYFASTIFCGSWYPENFTN-VDNFTSTIF 546
>Z81453-3|CAB03791.1| 480|Caenorhabditis elegans Hypothetical
protein B0250.4 protein.
Length = 480
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +2
Query: 140 YMDKSATLQELGYKDENELRETI---YDYLRTIRDPEKPNTLEDLKVVYEEGIFVKEPTA 310
+ K L + YKD N+ Y+ + ++ E T+E+L+ + G++ E
Sbjct: 156 FYGKLECLNKEEYKDINKTNTVWNKNYNKFCSFKEEEIHGTIEELQKMLNNGLYTDEFVF 215
Query: 311 DKVPVLRVE 337
DK P + V+
Sbjct: 216 DKTPFITVD 224
>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
F13B9.1c protein.
Length = 1609
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 458 HTTEDEINKQINDKERIAAAMENPNLRNLVENCI 559
HT I KQI + + A A+ENP ++VE+ +
Sbjct: 915 HTVRLYITKQIENIKNSAVAIENPEANDVVESLL 948
>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
F13B9.1b protein.
Length = 1614
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 458 HTTEDEINKQINDKERIAAAMENPNLRNLVENCI 559
HT I KQI + + A A+ENP ++VE+ +
Sbjct: 915 HTVRLYITKQIENIKNSAVAIENPEANDVVESLL 948
>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
F13B9.1a protein.
Length = 1632
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 458 HTTEDEINKQINDKERIAAAMENPNLRNLVENCI 559
HT I KQI + + A A+ENP ++VE+ +
Sbjct: 937 HTVRLYITKQIENIKNSAVAIENPEANDVVESLL 970
>Z66567-8|CAA91494.1| 402|Caenorhabditis elegans Hypothetical
protein ZK455.6 protein.
Length = 402
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 697 STITCTPLYAKNFVNFVNSFLSVIFENATSGAILENCCWVDLLLFGYAVF 548
++I+ PL+ N V S LS IF+N + +C + + GYA+F
Sbjct: 98 ASISIDPLFTPN----VASSLSAIFKNEKEDVLSTSCTILSQMTSGYAMF 143
>Z66561-9|CAA91462.1| 402|Caenorhabditis elegans Hypothetical
protein ZK455.6 protein.
Length = 402
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 697 STITCTPLYAKNFVNFVNSFLSVIFENATSGAILENCCWVDLLLFGYAVF 548
++I+ PL+ N V S LS IF+N + +C + + GYA+F
Sbjct: 98 ASISIDPLFTPN----VASSLSAIFKNEKEDVLSTSCTILSQMTSGYAMF 143
>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-5 protein.
Length = 2238
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 116 PVEVAKPAYMDKSAT-LQELGYKDENELRETIYDYLRTIRDPEKPN 250
PV VAK AYM+K+ T L + + E + TI P++ N
Sbjct: 334 PVSVAKKAYMNKNITPLHTAAISNSTHMLEAMRAVYPTINIPDQDN 379
>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform a protein.
Length = 2276
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 116 PVEVAKPAYMDKSAT-LQELGYKDENELRETIYDYLRTIRDPEKPN 250
PV VAK AYM+K+ T L + + E + TI P++ N
Sbjct: 334 PVSVAKKAYMNKNITPLHTAAISNSTHMLEAMRAVYPTINIPDQDN 379
>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform b protein.
Length = 2238
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 116 PVEVAKPAYMDKSAT-LQELGYKDENELRETIYDYLRTIRDPEKPN 250
PV VAK AYM+K+ T L + + E + TI P++ N
Sbjct: 334 PVSVAKKAYMNKNITPLHTAAISNSTHMLEAMRAVYPTINIPDQDN 379
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,138,610
Number of Sequences: 27780
Number of extensions: 410692
Number of successful extensions: 1138
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -