Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K16
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              27   0.30 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   1.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   1.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   1.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   4.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   4.9  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   4.9  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   6.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 230  RDPEKPNTLEDLKVVYEEGIFVKEPTADKVP 322
            R P +PN +     VY +    +EPT+ KVP
Sbjct: 1201 RPPSQPNGVITQYTVYTKADNAEEPTSQKVP 1231


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 658 VNFVNSFLSVIFENATSGAILENC 587
           V FVNSFL VI    +SG I   C
Sbjct: 14  VLFVNSFLFVIAAQDSSGRIFTIC 37


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 658 VNFVNSFLSVIFENATSGAILENC 587
           V FVNSFL VI    +SG I   C
Sbjct: 14  VLFVNSFLFVIAAQDSSGRIFTIC 37


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 658 VNFVNSFLSVIFENATSGAILENC 587
           V FVNSFL VI    +SG I   C
Sbjct: 14  VLFVNSFLFVIAAQDSSGRIFTIC 37


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = +1

Query: 502 EDCSCNGESQSKKPGGKLHSRRGVNQPNNNSLKWH 606
           +DC CN    ++ P   +   R V+    +  +W+
Sbjct: 303 DDCGCNSTMLNENPARVMACMRSVDAKTISVQQWN 337


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = +1

Query: 502 EDCSCNGESQSKKPGGKLHSRRGVNQPNNNSLKWH 606
           +DC CN    ++ P   +   R V+    +  +W+
Sbjct: 303 DDCGCNSTMLNENPARVMACMRSVDAKTISVQQWN 337


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 218 NSHILSLSTHSRLCSRALVM*H 153
           N +ILS S H  +CS   +  H
Sbjct: 361 NGNILSPSIHDNICSNGWICEH 382


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 722 VLFNSFSRLNYNLYSF 675
           + F SFS LN+NL  F
Sbjct: 139 IRFKSFSLLNFNLLFF 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,035
Number of Sequences: 438
Number of extensions: 4470
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)