Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K16
         (892 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68310.1 68414.m07803 expressed protein contains Pfam profile...   140   1e-33
At3g09380.1 68416.m01113 hypothetical protein contains Pfam prof...   100   1e-21
At4g04990.1 68417.m00728 expressed protein contains Pfam domain ...    33   0.34 
At5g46400.1 68418.m05711 expressed protein                             31   1.4  
At1g52560.1 68414.m05933 26.5 kDa class I small heat shock prote...    29   4.1  
At2g26200.1 68415.m03146 expressed protein                             29   5.5  
At4g24520.1 68417.m03515 NADPH-cytochrome p450 reductase, putati...    28   7.2  
At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast...    28   9.6  
At1g18500.1 68414.m02309 2-isopropylmalate synthase, putative st...    28   9.6  

>At1g68310.1 68414.m07803 expressed protein contains Pfam profile
           PF01883: Domain of unknown function
          Length = 159

 Score =  140 bits (338), Expect = 1e-33
 Identities = 66/124 (53%), Positives = 91/124 (73%), Gaps = 2/124 (1%)
 Frame = +2

Query: 206 IYDYLRT--IRDPEKPNTLEDLKVVYEEGIFVKEPTADKVPVLRVEYNPTVPHCSLATLI 379
           I+D L +  I+DPE PNTLEDL+VV E+ + V     D+   +RV + PTV HCS+AT+I
Sbjct: 40  IFDILSSSNIKDPEHPNTLEDLRVVTEDSVEVD----DENSYVRVTFTPTVEHCSMATVI 95

Query: 380 GLCIRIKILRSIHHPVKLDIFIKKGAHTTEDEINKQINDKERIAAAMENPNLRNLVENCI 559
           GLC+R+K+LRS+    K+DI +  G+H TED +NKQ+NDKER+AAA+ENPNL  +V+ C+
Sbjct: 96  GLCVRVKLLRSLPSRYKIDIRVAPGSHATEDALNKQLNDKERVAAALENPNLVEMVDECL 155

Query: 560 AEEE 571
             EE
Sbjct: 156 PSEE 159


>At3g09380.1 68416.m01113 hypothetical protein contains Pfam profile
           PF01883: Domain of unknown function
          Length = 156

 Score =  100 bits (239), Expect = 1e-21
 Identities = 48/107 (44%), Positives = 70/107 (65%), Gaps = 1/107 (0%)
 Frame = +2

Query: 218 LRTIRDPEKPN-TLEDLKVVYEEGIFVKEPTADKVPVLRVEYNPTVPHCSLATLIGLCIR 394
           +R I+DPE P  +LEDL V+ EE + V     D    +R+ + PT+PHC L T IGLCI 
Sbjct: 43  IRDIKDPEHPELSLEDLNVLTEESVEVD----DHKSYVRITFTPTLPHCHLPTHIGLCIL 98

Query: 395 IKILRSIHHPVKLDIFIKKGAHTTEDEINKQINDKERIAAAMENPNL 535
           +K+++S+    K+D+ +  G+H  E  +NKQ+ DKER+ AA+ENP L
Sbjct: 99  VKLVQSLPARFKVDVRVAPGSHDKETTVNKQLGDKERVTAALENPEL 145


>At4g04990.1 68417.m00728 expressed protein contains Pfam domain
           PF05553: Cotton fiber expressed protein
          Length = 303

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 14/51 (27%), Positives = 30/51 (58%)
 Frame = +2

Query: 110 KQPVEVAKPAYMDKSATLQELGYKDENELRETIYDYLRTIRDPEKPNTLED 262
           ++PV + +P  +      Q+    DE+E  E +++ ++  + P+KPN+L+D
Sbjct: 140 EKPVGLRRPPTVPVKTFPQDNTSGDESETMEEMWERVKAEKQPKKPNSLQD 190


>At5g46400.1 68418.m05711 expressed protein
          Length = 1036

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
 Frame = +2

Query: 221 RTIRDPEKPNTLEDLKVVYEEGIFVKEPTADKVPVLRVEYNPTVPHCSLATLIGLCIRIK 400
           +T+   E   T   L V +    +V   +AD    + +E N  VPHC L  L+   +R+ 
Sbjct: 431 KTLIGKENLETTARLYVQFSRLKYVITNSADDAAQILLEGNENVPHCKL--LLEELMRLL 488

Query: 401 ILRSIHHPVKL--DIFIKKGAHTTEDEINKQINDKERIA 511
           ++      V L   I  K+ +H  +        DKE I+
Sbjct: 489 MMHGGSRQVDLLDPIIDKELSHQADSSDGLSAEDKEEIS 527


>At1g52560.1 68414.m05933 26.5 kDa class I small heat shock
           protein-like (HSP26.5-P) contains Pfam profile: PF00011
           Hsp20/alpha crystallin family; identified in Scharf,
           K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 232

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/56 (25%), Positives = 30/56 (53%)
 Frame = +2

Query: 371 TLIGLCIRIKILRSIHHPVKLDIFIKKGAHTTEDEINKQINDKERIAAAMENPNLR 538
           +L+G      ++ + H+P+KL+ F+   A   ED++N +++  E+ +     P  R
Sbjct: 18  SLMGQSCERGLVGNRHNPMKLNRFMATSAGEQEDKMNTEVSVSEKKSPRQNFPRRR 73


>At2g26200.1 68415.m03146 expressed protein
          Length = 565

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
 Frame = +2

Query: 110 KQPVEVAKPAYMDKSATLQELGYKDENELRETIYDYLR-TIRDPEKPNTLEDLKVVYEEG 286
           K P +   PA +DKS     +  K E + R+ I DY    I D             +E  
Sbjct: 269 KNPCDSLTPAKLDKSEQQDSIQSKSEEQERKEIIDYTDIDISDGLAMEMFGASPSSHEMS 328

Query: 287 IFVKEPTADKVPVLRVEYNPT 349
           +     +A K+ +L  EY  T
Sbjct: 329 VVKLRDSAFKIKLLSKEYQHT 349


>At4g24520.1 68417.m03515 NADPH-cytochrome p450 reductase, putative
           / NADPH-ferrihemoprotein reductase, putative similar to
           NADPH-ferrihemoprotein reductase NADPH-cytochrome P450
           oxydoreductase isoform 1 [Populus balsamifera subsp.
           trichocarpa x Populus deltoides] GI:13183562, SP|P37116
           NADPH-cytochrome P450 reductase (EC 1.6.2.4) (CPR)
           [Vigna radiata] {Phaseolus aureus}
          Length = 692

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 413 IHHPVKLDIFIKKGAHTTEDE 475
           IHHP ++D+ ++K  HT E +
Sbjct: 289 IHHPCRVDVAVQKELHTHESD 309


>At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast
           (ATPC1) identical to SP|Q01908 ATP synthase gamma chain
           1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}
          Length = 373

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 19/75 (25%), Positives = 38/75 (50%)
 Frame = +2

Query: 251 TLEDLKVVYEEGIFVKEPTADKVPVLRVEYNPTVPHCSLATLIGLCIRIKILRSIHHPVK 430
           T ++ K+  E   F + PTAD  P+L+ E +P      L  L+ L +  +ILR++   + 
Sbjct: 267 TTKEGKLTVERETF-RTPTADFSPILQFEQDPVQ---ILDALLPLYLNSQILRALQESLA 322

Query: 431 LDIFIKKGAHTTEDE 475
            ++  +  A ++  +
Sbjct: 323 SELAARMSAMSSASD 337


>At1g18500.1 68414.m02309 2-isopropylmalate synthase, putative
           strong similarity to 2-isopropylmalate synthase (IMS1)
           [Arabidopsis thaliana] GI:12330687; contains Pfam
           profile PF00682: HMGL-like
          Length = 631

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 161 LQELGYKDENELRETIYDYLRTIRDPEKPNTLEDLKVVYEEGIFVKE 301
           L ELGY+ ++E   TI+   +T+ + +K  T  D+  +  + +F  E
Sbjct: 439 LTELGYQLDDEQLSTIFWRFKTVAEQKKRVTDADIIALVSDEVFQPE 485


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,840,478
Number of Sequences: 28952
Number of extensions: 372623
Number of successful extensions: 992
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)