Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_K15
(918 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein... 73 4e-14
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 54 3e-08
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 43 5e-05
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 35 0.014
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 30 0.40
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 28 1.6
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 28 2.1
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 28 2.1
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.7
>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
Stg1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 73.3 bits (172), Expect = 4e-14
Identities = 56/149 (37%), Positives = 79/149 (53%), Gaps = 5/149 (3%)
Frame = +2
Query: 29 NSLRFESLEWIRMITGEPENTSGDMDNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMAF 208
+ L E+ EWI N D+ + L+ G +LC++ I+ S+M F
Sbjct: 3 SQLEKEAREWIEETLHTKLNAQLDL---LDQLQSGVILCRICKEALGANIR-YKESNMPF 58
Query: 209 KCMENINAFLEAARQL-GVPAQETFQTVDLWERQNLNSVVICLQSLGRKAGTY--GK-PS 376
MENI+AF+ A+Q+ VP+Q+ FQT DL+ER+N V+ + S R A GK
Sbjct: 59 VQMENISAFINYAQQVVHVPSQDMFQTSDLFERRNDEQVLRSIHSFSRYAAKMFPGKVRG 118
Query: 377 IGPKEAEKNVRNFSEEQLRA-GQGVISLQ 460
+GPK AEK R FS +Q R +GV SLQ
Sbjct: 119 LGPKLAEKKPRVFSAQQQREFREGVNSLQ 147
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 54.0 bits (124), Expect = 3e-08
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Frame = +2
Query: 44 ESLEWIRMITGEPENTSGDMDNFYEVLKDGTLLCKLANNIHPN-MIKKINTSSMAFKCME 220
E+ +WI G G F + L++G +L L P+ +IK ++ + F+ +
Sbjct: 46 EAKKWIEECLG---TDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSD 102
Query: 221 NINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 343
NIN FL+ +G+P F+ D++E +NL V+ C+ +L
Sbjct: 103 NINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHAL 143
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 43.2 bits (97), Expect = 5e-05
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Frame = +2
Query: 44 ESLEWIRMITGEPENTSGDMDNFYEVLKDGTLLCKLANNIHPNMIKKINTS-SMAFKCME 220
E+ +W+ E N ++D+F + L +G +LC+LA +P + ++ +
Sbjct: 69 EAKKWLEE---ETNNEYQNLDDFVDALVNGKVLCQLAFKYYPKLASNWKPRYQISERNTV 125
Query: 221 NINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 343
+NAF +G+ F+T DL R N+ V+ CL +L
Sbjct: 126 YLNAFFHFLDFIGMFTPFRFETKDLVRRFNIPKVIYCLHAL 166
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 35.1 bits (77), Expect = 0.014
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 13/93 (13%)
Frame = +2
Query: 20 TIGNSLRFESLEWIR-MITGEPENTSGDMDN-----FYEVLKDGTLLCKLANNIHPNMI- 178
TI R E ++ I ++ G+P+ S N F++ KDG +L KL N+ P+ I
Sbjct: 109 TINEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTID 168
Query: 179 -----KKINTSSMA-FKCMENINAFLEAARQLG 259
K+ N + FKC+EN N + +A+ +G
Sbjct: 169 ERVLNKQRNNKPLDNFKCIENNNVVINSAKAMG 201
Score = 30.3 bits (65), Expect = 0.40
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Frame = +2
Query: 107 NFYEVLKDGTLLCKLANNIHPNMI--KKINTS------SMAFKCMENINAFLEAARQLG 259
+F+ L+DG +L + + I PN + KK+N + M FK +EN N ++ + G
Sbjct: 406 DFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQG 464
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 30.3 bits (65), Expect = 0.40
Identities = 19/89 (21%), Positives = 35/89 (39%)
Frame = +2
Query: 179 KKINTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAG 358
++ +S A E + AF+E A+Q G+P E W+ + + +L +
Sbjct: 118 RRFRSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLR 177
Query: 359 TYGKPSIGPKEAEKNVRNFSEEQLRAGQG 445
Y + +NVR + G+G
Sbjct: 178 YYIINKLNSDPCWRNVRFILSDASVPGEG 206
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Frame = +3
Query: 411 TSPRSS---SGLVRESYLFXYGSNKGAN-QSGINFGN 509
TSP SS S ++ +Y F +GSNK A+ +S +++ N
Sbjct: 47 TSPTSSFFNSSMISSNYTFPHGSNKQASLESPVSYSN 83
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 235 PRSRKTVGCTGTGNFSNCRPVGETESQLRRDLLAVTGQKGWNLR 366
P+ + V CTG G+ V +S D L +TG+ G L+
Sbjct: 119 PKFKNIVDCTGAGDVDTSVEVAAADS---NDYLTITGRSGRTLK 159
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 582 LRSI*HACNKPFKCARLDSFTCVSCY 505
LRS ACN K R DSF C C+
Sbjct: 55 LRSSSVACNTCLKIIRNDSFHCTKCF 80
>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 203
Score = 27.1 bits (57), Expect = 3.7
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Frame = +2
Query: 122 LKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENI-NAFLEAARQLGVPAQETFQTVDLW 298
LK+ T + L+++IHPN +++ S +N+ N E + L + + VD +
Sbjct: 6 LKENTEIINLSSSIHPNRDSYLDSQSDPLN--QNLYNIETENVKDLNI------EDVDYY 57
Query: 299 ERQNLNSVVICLQSLGRKAGTYGKPSIGPKEAEKNVRN 412
E+ L + I +++ TY K S+G +N N
Sbjct: 58 EK--LQNFKIVDENIDPGLRTYSKRSVGVNNTFQNPCN 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,299
Number of Sequences: 5004
Number of extensions: 61615
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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