Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_K15
(918 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0689 - 26294961-26294976,26295271-26295414,26295506-262959... 40 0.002
05_06_0116 - 25719030-25719458,25720138-25720301,25720390-257206... 40 0.003
01_05_0108 + 18183250-18183336,18183451-18183962,18184074-181842... 33 0.32
03_02_0712 - 10600147-10600196,10600257-10600378,10600993-106014... 31 1.3
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476... 30 3.0
03_01_0400 - 3102325-3102519,3103009-3103455,3105063-3105500 29 3.9
02_04_0414 - 22685981-22686178,22686374-22686465,22686580-226866... 29 5.2
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 28 9.0
05_03_0427 - 13886814-13887935 28 9.0
>11_06_0689 -
26294961-26294976,26295271-26295414,26295506-26295909,
26296112-26296261,26296334-26296497,26296526-26296836,
26296948-26297084,26297276-26297416,26297821-26297867,
26297977-26298072,26298168-26298249,26298332-26298472,
26298607-26298702,26298809-26298877,26298959-26299030,
26299201-26299368,26299577-26299711,26299792-26299958,
26301213-26301369
Length = 898
Score = 40.3 bits (90), Expect = 0.002
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Frame = +2
Query: 38 RFESLEWIR----MITGEPENTSGDMDNFYEVLKDGTLLCKLANNIHPNMIKKI------ 187
R+E+ W+R ++ G+ + F L++G +LC N + P + K+
Sbjct: 56 RYEAANWLRRVVGVVCGKDLAEEPSEEEFRLGLRNGIVLCNALNKVQPGSVPKVVEAPSD 115
Query: 188 ---NTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 343
+ A++ EN+ FL + LG+P TF+ DL + VV C+ SL
Sbjct: 116 SADGAALCAYQYFENVRNFLMGLQDLGLP---TFEASDLEKGGKGVRVVDCVLSL 167
>05_06_0116 -
25719030-25719458,25720138-25720301,25720390-25720643,
25720727-25720782,25721032-25721169,25721315-25721421,
25721502-25721681,25721757-25721852,25721926-25722007,
25722084-25722425,25722666-25722695,25722788-25722880,
25722963-25723040,25723122-25723222,25723833-25724058,
25724647-25724760,25724855-25725009,25725515-25725554
Length = 894
Score = 39.9 bits (89), Expect = 0.003
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Frame = +2
Query: 38 RFESLEWIRMITGE---PENTSGDMDNFYEVLKDGTLLCKLANNIHPNMIKKI-NTSSMA 205
R E +EW+ + E P ++S D E+L DGT+LC + N + P ++++ + +
Sbjct: 17 RAEVIEWLNALLPEYCLPLDSSDD--ELRELLSDGTVLCHIVNALIPGVLEESWGAYASS 74
Query: 206 FKCMENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICL 334
+ ++ FL +G+P F DL E +++ VV CL
Sbjct: 75 DQHAGHVKKFLAVVADMGLPG---FSVKDL-EEGSMSGVVDCL 113
>01_05_0108 +
18183250-18183336,18183451-18183962,18184074-18184245,
18184984-18185022,18185117-18185185,18185281-18185397,
18185842-18186056,18187085-18187240,18187328-18187527,
18187927-18188084,18188321-18188417,18188738-18188829,
18189018-18189191
Length = 695
Score = 33.1 bits (72), Expect = 0.32
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = +2
Query: 104 DNFYEVLKDGTLLCKLANNIHPNMI--KKINTSSM--AFKCMENINAFLEAARQLG 259
D+ + + KDG LLCKL N P I + INT + ++ EN L +A+ +G
Sbjct: 187 DHLFHLTKDGVLLCKLINLAVPGTIDERAINTKKLLNLWEKNENHTLCLNSAKAIG 242
>03_02_0712 -
10600147-10600196,10600257-10600378,10600993-10601489,
10601663-10601851,10601936-10602099,10602193-10602446,
10602535-10602691,10602830-10602995,10603121-10603227,
10603305-10603478,10603594-10603689,10603781-10603862,
10603948-10604058,10604253-10604309,10604638-10604709,
10604799-10605041,10605195-10605341,10605381-10605616,
10605745-10605865
Length = 1014
Score = 31.1 bits (67), Expect = 1.3
Identities = 18/65 (27%), Positives = 34/65 (52%)
Frame = +2
Query: 149 LANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVI 328
+ N ++++ + AF+ EN+ FL AA+++G+P F+ DL + VV
Sbjct: 121 VVNTAADSVLQPDGAALSAFQYFENVRNFLVAAQEIGLPC---FEASDLEQGGKSARVVN 177
Query: 329 CLQSL 343
C+ +L
Sbjct: 178 CVLAL 182
>02_03_0026 -
14045653-14045874,14047023-14047215,14047518-14047618,
14050145-14050272,14050409-14050502,14050749-14051237,
14052622-14052915,14053602-14053732,14053829-14055440,
14055539-14055651,14055902-14056933,14057023-14057145,
14057250-14057688
Length = 1656
Score = 29.9 bits (64), Expect = 3.0
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +1
Query: 220 EYQRFPRSRKTVGCTGTGNFSNCRPVGETESQLRRDLLAVTGQKGWNLREAVNRTERS*E 399
+YQR R+RK +GTGN ++ PV T + L+ G+ G R A++ TE+ E
Sbjct: 22 KYQREWRARKKAKLSGTGNVTSDSPVLAT--TISATELSEGGEVG---RSAISSTEKKEE 76
Query: 400 ERAK 411
K
Sbjct: 77 RNRK 80
>03_01_0400 - 3102325-3102519,3103009-3103455,3105063-3105500
Length = 359
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 335 QSLGRKAGTYGK-PSIGPKEAEKNVRNFSEEQLRAGQGVIS 454
+S GRK + P+ G AE +VRN S QLR G+++
Sbjct: 37 ESFGRKGLRFAADPATGAPTAELSVRNGSSLQLRLADGLVT 77
>02_04_0414 -
22685981-22686178,22686374-22686465,22686580-22686676,
22686801-22686916,22687314-22687513,22687588-22687740,
22687960-22688171,22688403-22688519,22688613-22688687,
22688815-22688853,22689518-22689689,22689809-22690056,
22690151-22690324,22690418-22690504
Length = 659
Score = 29.1 bits (62), Expect = 5.2
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = +2
Query: 104 DNFYEVLKDGTLLCKLANNIHPNMI--KKINTSS--MAFKCMENINAFLEAARQLG 259
++ + +++DG LLCKL N P I + INT ++ EN L +A+ +G
Sbjct: 157 NDIFNLVRDGVLLCKLINVAVPGTIDERAINTKKDPNPWERNENHTLCLNSAKAIG 212
>12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -3
Query: 268 CRYTQLSCGFEESVDI-LHTLEGHRRCVDLFDHVRVDV 158
CR +SCG E+++I + T E H+ +D+ ++ DV
Sbjct: 1106 CRICNISCGTVENLNIHVETREHHQHAMDIVLKMKQDV 1143
>05_03_0427 - 13886814-13887935
Length = 373
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 168 GWMLLASLHRRVPSLSTS*KLSISPEVFSGSPVIIRI 58
GW+ L LHR SL K +SP + V+ RI
Sbjct: 209 GWVWLKLLHRSAASLGVHSKTKLSPRFYGPYQVLGRI 245
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,917,960
Number of Sequences: 37544
Number of extensions: 402854
Number of successful extensions: 1055
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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