Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K12
         (894 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27700.1 68418.m03322 40S ribosomal protein S21 (RPS21C) ribo...    46   4e-05
At3g53890.1 68416.m05953 40S ribosomal protein S21 (RPS21B) ribo...    46   4e-05

>At5g27700.1 68418.m03322 40S ribosomal protein S21 (RPS21C)
           ribosomal protein S21, Zea mays, PIR:T03945
          Length = 85

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 20/31 (64%), Positives = 23/31 (74%)
 Frame = +2

Query: 164 MQXXAGXFVDLYCPRKCSASNRLIHAKDHAS 256
           MQ   G   +LY PRKCSA+NRLI +KDHAS
Sbjct: 1   MQNEEGQVTELYIPRKCSATNRLITSKDHAS 31


>At3g53890.1 68416.m05953 40S ribosomal protein S21 (RPS21B)
           ribosomal protein S21, cytosolic - Oryza sativa,
           PIR:S38357
          Length = 82

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = +2

Query: 164 MQXXAGXFVDLYCPRKCSASNRLIHAKDHAS 256
           M+  AG   +LY PRKCSA+NR+I +KDHAS
Sbjct: 1   MENDAGQVTELYIPRKCSATNRMITSKDHAS 31


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,413,042
Number of Sequences: 28952
Number of extensions: 162153
Number of successful extensions: 249
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)