Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K11
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    28   1.6  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    27   4.9  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   6.5  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.5  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   6.5  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    26   8.6  
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    26   8.6  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    26   8.6  

>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 625 HSRDVTTEQMSDATNTATALAFIKELEEKHEDHRTEQEKLDD-DIFKK 765
           HS  VT  Q S A NT+  L F+ E  E+ ++ R  +++L D   FKK
Sbjct: 41  HSSSVTASQASLAFNTSEKL-FVNENAEERKNSRDLRKQLPDRPKFKK 87


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
            Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
 Frame = +3

Query: 345  LTRMSSFHERQKNLFNLLKDAEEQYSFSKSNKVT--------TTQDYGTIDRKSYRKLKH 500
            L R    +E+ K+L  L ++A  +Y  + SN +           +DYG++++K+Y +  +
Sbjct: 921  LARKKECNEKIKSLGVLPEEAFIKYVSTSSNAIVKKLHKINEALKDYGSVNKKAYEQFNN 980

Query: 501  EMKQ 512
              KQ
Sbjct: 981  FTKQ 984


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 436 LDFEKLYCSSASLSRLNKFFCLS*NDDILVNFWS*YSLLLSIY 308
           +DFE LY  S + S++ K   L  N+D +++     S + S++
Sbjct: 776 MDFEGLYRKSGATSQMKKIVALLRNEDTVLDPSEDISAVTSVF 818


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 604 LRNGNIIHSRDVTTEQMSDATNTATALAFIKELEEKHEDHRTEQEKLDDDI 756
           ++NG ++H    T E     T+     A +K L ++H +H T+    DD +
Sbjct: 305 IKNG-LLHYNMETAETDESYTDLDDTFARLKNLSQRHTNHSTDHH--DDTV 352


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 348  TRMSSFHERQKNLFNLLKDAEEQYSFSKSNKVTTTQD 458
            +R+   HER  +L N +  A+E+Y F  + K +  +D
Sbjct: 895  SRVEVVHERLSSLENQVTIADEKYEFLYAEKQSIEED 931


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +3

Query: 522 KQSIFKRPEANIRECLETKAVP---DHVKNPEKWKYYSLSGCYN*ANVRRNQHSNCIGIY 692
           K+ + K PE  I   +E K  P   D +K+PEKW   +     +   V  ++ ++ I + 
Sbjct: 387 KRLLCKDPEQRIT-LVEVKLHPWTLDGLKDPEKWLQNTDPSTVSRVEVSTDEVASAISLV 445

Query: 693 KRVGRK 710
            R+ RK
Sbjct: 446 GRLRRK 451


>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 342 KLTRMSSFHERQKNLFNLLKDAEEQYSFSK 431
           ++ R  ++H R++  F+L+K AEE+    K
Sbjct: 129 RIFRSQNWHARRQKQFHLMKPAEERKQLPK 158


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 628 SRDVTTEQMSDATNTATALAFIKELEEKHEDHRTEQEKLDD 750
           S  VT + + +  N     A  K+ EEK  D R  + K+D+
Sbjct: 511 SEAVTEDLIEEVVNRLRDKAIHKKAEEKRADERRIRRKIDN 551


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,214,779
Number of Sequences: 5004
Number of extensions: 61754
Number of successful extensions: 191
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)