Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K11
         (922 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51702| Best HMM Match : SURF6 (HMM E-Value=4)                       31   0.99 
SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)                29   5.3  
SB_8570| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   7.0  
SB_2418| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   7.0  
SB_42708| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.0  
SB_17600| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.0  
SB_57157| Best HMM Match : Seryl_tRNA_N (HMM E-Value=1.2)              28   9.2  

>SB_51702| Best HMM Match : SURF6 (HMM E-Value=4)
          Length = 260

 Score = 31.5 bits (68), Expect = 0.99
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +3

Query: 582 VPDHVKNPEKWKYYSL 629
           VPDHV +PEKW  YSL
Sbjct: 59  VPDHVLHPEKWTKYSL 74


>SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 656

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 504 MKQFRGKQSIFKRPEANIRECLETKAVPDHVKNPEKWKYYSLSGCYN*ANVR 659
           M +  G +    + EA ++   E K +P+   +PEK K Y   G YN   V+
Sbjct: 280 MTEGEGNRKKDAKKEAAVKMLAELKKLPEPPVDPEKKKKYQRHGLYNAKKVK 331


>SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)
          Length = 1671

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 694 KELEEKHEDHRTEQEKLDDDIFKKPRFNFSTAIKK 798
           + L+EK +    +QE+++D + K+   NF+  IK+
Sbjct: 421 RSLKEKLDSIENQQEEVEDTVDKEQEINFAAVIKE 455


>SB_8570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +1

Query: 604 LRNGNIIHSRDVTTEQM-SDAT--NTATALAFIKELEEKHEDHR 726
           LR+ +IIH+R V+  Q  +D T   T T L  + +++  HE HR
Sbjct: 35  LRDSSIIHTRAVSLYQRHTDITLIKTRTKLRHLVDIDPCHETHR 78


>SB_2418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 483 YRKLKHEMKQFRGKQSIFKRPEANIRECLETKAVPDHVKNPEK 611
           YRK     K FR  Q+   R  +N+R+C E K   ++ K   +
Sbjct: 15  YRKTSKRRKCFRTFQTNSYRKTSNLRKCAERKLTTEYRKTSNR 57


>SB_42708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +1

Query: 628 SRDVTTEQMSDATNTATALAFIKELEEKHEDHRTEQEKLDDDIFKKPRFNFSTAIKKT 801
           +R  TT + S  T  A     ++ L EK+ D      +   D  ++ +++F+T+ K+T
Sbjct: 48  ARTQTTAETSFTTEGAATRPGLQSLREKYPDLNENLIRFQSDQRERRQYSFATSTKET 105


>SB_17600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +2

Query: 701 WKKNMRIIEQNKKNLMMIYLKSQDLIFLLQLKKRSEEKKXIVKEVSIM 844
           WK  + + + N   + +  LK +D +F   L+ ++ EKK  VK ++I+
Sbjct: 227 WKNFLTLTDNNSHYVWVYNLKRKDGVFHKILEWKAVEKKSTVKMLNIL 274


>SB_57157| Best HMM Match : Seryl_tRNA_N (HMM E-Value=1.2)
          Length = 334

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 17/52 (32%), Positives = 34/52 (65%), Gaps = 5/52 (9%)
 Frame = +2

Query: 704 KKNMRIIEQNKKNLMMIYLKSQDLIF----LLQLKKRSEEKK-XIVKEVSIM 844
           +KN R  EQ +KNL+++  +   L F    L+Q K++S+E++  +V+E++ +
Sbjct: 101 QKNERAAEQQEKNLILLKTQLGALKFENFTLIQEKRKSDEQRGHLVQELAAL 152


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,921,489
Number of Sequences: 59808
Number of extensions: 424262
Number of successful extensions: 1010
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2669453024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)