Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K11
         (922 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83216-2|CAB05673.1|  315|Caenorhabditis elegans Hypothetical pr...    35   0.094
Z83108-5|CAB05508.1|  645|Caenorhabditis elegans Hypothetical pr...    33   0.38 
Z83108-4|CAB05507.1|  645|Caenorhabditis elegans Hypothetical pr...    33   0.38 
U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin fam...    32   0.66 
DQ178635-1|ABD75714.1|  361|Caenorhabditis elegans tetraspanin f...    32   0.66 

>Z83216-2|CAB05673.1|  315|Caenorhabditis elegans Hypothetical
           protein C08F11.2 protein.
          Length = 315

 Score = 34.7 bits (76), Expect = 0.094
 Identities = 21/78 (26%), Positives = 40/78 (51%)
 Frame = -3

Query: 623 IIFPFLRIFYMIWYSFSF*AFPYVSFRPFEYTLFTSELLHFVLEFSVTFSVNCAIILGCC 444
           I F F+ + ++I    SF     + F+  EY +F + L++ V+ F  + S +C I L   
Sbjct: 65  INFFFISLVFVILQDLSF-IIRNIGFKKIEYEIFLTLLINGVISFFSSMSFSCMISLQFL 123

Query: 443 DFIRFRKTVLFFSVFEQI 390
             I+ R  +L+   F+++
Sbjct: 124 SVIQ-RLVILYLPKFKRV 140


>Z83108-5|CAB05508.1|  645|Caenorhabditis elegans Hypothetical
           protein F44E5.5 protein.
          Length = 645

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +3

Query: 393 LLKDAEEQYSFSKSNKVTTTQDYGTIDRKSYRKLKHEMKQFRGKQSIFKRPEANIRECLE 572
           +L  + E  S  KSN++T   + G + +    ++ HE KQF  K+   +R     R  LE
Sbjct: 486 ILNVSAEDKSTGKSNRITIQNEKGRLTQSDIDRMVHEAKQFE-KEDGEQRERVQARNQLE 544

Query: 573 TKA 581
             A
Sbjct: 545 AYA 547


>Z83108-4|CAB05507.1|  645|Caenorhabditis elegans Hypothetical
           protein F44E5.4 protein.
          Length = 645

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +3

Query: 393 LLKDAEEQYSFSKSNKVTTTQDYGTIDRKSYRKLKHEMKQFRGKQSIFKRPEANIRECLE 572
           +L  + E  S  KSN++T   + G + +    ++ HE KQF  K+   +R     R  LE
Sbjct: 486 ILNVSAEDKSTGKSNRITIQNEKGRLTQSDIDRMVHEAKQFE-KEDGEQRERVQARNQLE 544

Query: 573 TKA 581
             A
Sbjct: 545 AYA 547


>U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin family
           protein 18 protein.
          Length = 473

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +3

Query: 420 SFSKSNKVTTTQDYGTIDRKSYRKLKHEMKQFRGKQSIFKRPEANIRECLETKAVPDHVK 599
           S S   K++T++D G +   S  KL  +  +   K+    + +  +R+  ETK  P+ V 
Sbjct: 384 STSNIGKLSTSRDDGVLSSDSNDKLTKKSTEHPMKKEKQTKNKVQLRKSTETKQKPNVVA 443

Query: 600 NPEK 611
            P+K
Sbjct: 444 KPQK 447


>DQ178635-1|ABD75714.1|  361|Caenorhabditis elegans tetraspanin
           family protein protein.
          Length = 361

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +3

Query: 420 SFSKSNKVTTTQDYGTIDRKSYRKLKHEMKQFRGKQSIFKRPEANIRECLETKAVPDHVK 599
           S S   K++T++D G +   S  KL  +  +   K+    + +  +R+  ETK  P+ V 
Sbjct: 272 STSNIGKLSTSRDDGVLSSDSNDKLTKKSTEHPMKKEKQTKNKVQLRKSTETKQKPNVVA 331

Query: 600 NPEK 611
            P+K
Sbjct: 332 KPQK 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,799,630
Number of Sequences: 27780
Number of extensions: 351446
Number of successful extensions: 1058
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)