Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K09
         (993 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2DFC2 Cluster: Formin Homology 2 Domain containing pro...    28   3.1  
UniRef50_A0CFX0 Cluster: Chromosome undetermined scaffold_177, w...    24   6.9  
UniRef50_Q9YMX1 Cluster: Essential structural protein pp78-81; n...    30   7.1  
UniRef50_Q60R78 Cluster: Putative uncharacterized protein CBG214...    33   8.6  

>UniRef50_A2DFC2 Cluster: Formin Homology 2 Domain containing
           protein; n=2; Eukaryota|Rep: Formin Homology 2 Domain
           containing protein - Trichomonas vaginalis G3
          Length = 1189

 Score = 28.3 bits (60), Expect(2) = 3.1
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +2

Query: 683 GXXXXPGLXPPPPPP 727
           G    PGL PPPPPP
Sbjct: 660 GAPAAPGLVPPPPPP 674



 Score = 25.4 bits (53), Expect(2) = 3.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 701 GLXPPPPPPXXTP 739
           G+ PPPPPP   P
Sbjct: 677 GVPPPPPPPGGVP 689


>UniRef50_A0CFX0 Cluster: Chromosome undetermined scaffold_177,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_177,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1328

 Score = 24.2 bits (50), Expect(3) = 6.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 698 PGLXPPPPPP 727
           PG  PPPPPP
Sbjct: 834 PGGAPPPPPP 843



 Score = 24.2 bits (50), Expect(3) = 6.9
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 701 GLXPPPPPPXXTP 739
           G  PPPPPP   P
Sbjct: 836 GAPPPPPPPGPRP 848



 Score = 22.2 bits (45), Expect(3) = 6.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 677 PTGXXXXPGLXPPPPP 724
           P G      L PPPPP
Sbjct: 793 PPGTISVSALAPPPPP 808


>UniRef50_Q9YMX1 Cluster: Essential structural protein pp78-81; n=2;
           Nucleopolyhedrovirus|Rep: Essential structural protein
           pp78-81 - Lymantria dispar multicapsid nuclear
           polyhedrosis virus (LdMNPV)
          Length = 555

 Score = 29.9 bits (64), Expect(2) = 7.1
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +2

Query: 659 PQRXRXPTGXXXXPGLXPPPPPP 727
           P R   PTG    P   PPPPPP
Sbjct: 232 PIRQETPTGLFAPPPPPPPPPPP 254



 Score = 22.6 bits (46), Expect(2) = 7.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 710 PPPPPPXXTP 739
           PPPPPP   P
Sbjct: 269 PPPPPPLPPP 278


>UniRef50_Q60R78 Cluster: Putative uncharacterized protein CBG21491;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG21491 - Caenorhabditis
           briggsae
          Length = 429

 Score = 33.5 bits (73), Expect = 8.6
 Identities = 18/48 (37%), Positives = 20/48 (41%)
 Frame = +2

Query: 602 GVXP*APAPXTSHHFXXXSPQRXRXPTGXXXXPGLXPPPPPPXXTP*T 745
           G  P   +P T       SPQ    P G     G+ PPPPPP   P T
Sbjct: 356 GAPPAGGSPPTGSP-PPPSPQGGAGPRGKRQVSGVQPPPPPPGGAPPT 402


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 481,492,633
Number of Sequences: 1657284
Number of extensions: 5736687
Number of successful extensions: 41511
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32754
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 93489553883
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)