Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K09
         (993 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   2.8  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   2.8  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    23   4.9  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   8.5  

>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 610 PXGSGPXHVASLXSTLPSEXAXP 678
           P GS P H +S  ST P+    P
Sbjct: 40  PSGSSPQHSSSSASTSPAARMYP 62


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 610 PXGSGPXHVASLXSTLPSEXAXP 678
           P GS P H +S  ST P+    P
Sbjct: 40  PSGSSPQHSSSSASTSPAARMYP 62


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 677 PTGXXXXPGLXPPPPP 724
           PT     P   PPPPP
Sbjct: 203 PTEDCDVPSTIPPPPP 218


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +3

Query: 390 PGXXRPCVLGALPLPRGXGS 449
           P    PC  G+  LP G GS
Sbjct: 32  PQLHSPCATGSNGLPAGAGS 51


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,070
Number of Sequences: 336
Number of extensions: 1221
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 28237209
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)