Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K09
         (993 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   0.89 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   1.0  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 24.2 bits (50), Expect(2) = 0.89
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 665 RXRXPTGXXXXPGLXPPPPPP 727
           R + P G        PPPPPP
Sbjct: 322 RGKPPIGNGSSNSSLPPPPPP 342



 Score = 23.4 bits (48), Expect(2) = 0.89
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 710 PPPPPPXXTP*T 745
           PPPPPP   P T
Sbjct: 361 PPPPPPRSAPST 372


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 24.6 bits (51), Expect(2) = 1.0
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 698 PGLXPPPPPP 727
           PG  PPPPPP
Sbjct: 6   PGNPPPPPPP 15



 Score = 22.6 bits (46), Expect(2) = 1.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 710 PPPPPPXXTP 739
           PPPPPP   P
Sbjct: 11  PPPPPPGFEP 20


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,638,381
Number of Sequences: 5004
Number of extensions: 14139
Number of successful extensions: 62
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 513276802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)