Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K09
         (993 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)                   25   2.3  
SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         25   3.8  
SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.7  
SB_17044| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)                      25   9.0  

>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
          Length = 739

 Score = 24.6 bits (51), Expect(2) = 2.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 701 GLXPPPPPPXXTP 739
           G  PPPPPP   P
Sbjct: 209 GAPPPPPPPFGAP 221



 Score = 24.2 bits (50), Expect(2) = 2.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 698 PGLXPPPPPP 727
           PG  PPPPPP
Sbjct: 207 PGGAPPPPPP 216


>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 25.0 bits (52), Expect(2) = 3.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 677 PTGXXXXPGLXPPPPPP 727
           P+      GL PPPPPP
Sbjct: 730 PSPQPGCAGLPPPPPPP 746



 Score = 23.0 bits (47), Expect(2) = 3.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 710 PPPPPPXXTP 739
           PPPPPP   P
Sbjct: 754 PPPPPPIDVP 763


>SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1486

 Score = 26.2 bits (55), Expect(2) = 4.7
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +2

Query: 620  PAPXTSHHFXXXSPQRXRXPTGXXXXPGLXPPPP 721
            P P   H      P     P G     GL PPPP
Sbjct: 1224 PPPMGHHMMNMPPPPPAMPPDGPPKFMGLPPPPP 1257



 Score = 21.4 bits (43), Expect(2) = 4.7
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +2

Query: 698  PGLXPPPPPPXXTP 739
            PG+ P PP P   P
Sbjct: 1257 PGMRPMPPQPPFMP 1270


>SB_17044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +2

Query: 659 PQRXRXPTGXXXXPGLXPPPPPPXXTP 739
           P   R P G    PG  PPPPPP   P
Sbjct: 122 PSGPRAPPGG---PGAPPPPPPPAVVP 145


>SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)
          Length = 330

 Score = 24.6 bits (51), Expect(2) = 9.0
 Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
 Frame = +2

Query: 620 PAPXTSHHFXXXSPQRXRXPT-GXXXXPGLXPPPPPP 727
           P P  S +     P      T G     G  PPPPPP
Sbjct: 270 PIPSASQNATPPPPPPPPSNTPGMFASSGFQPPPPPP 306



 Score = 22.2 bits (45), Expect(2) = 9.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 710 PPPPPPXXT 736
           PPPPPP  T
Sbjct: 311 PPPPPPEPT 319


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,651,016
Number of Sequences: 59808
Number of extensions: 161191
Number of successful extensions: 983
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2955465848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)