Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K09
         (993 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB033031-1|BAA86519.1| 1217|Homo sapiens KIAA1205 protein protein.     26   7.7  
BC034003-1|AAH34003.1|  600|Homo sapiens PRR12 protein protein.        26   8.2  

>AB033031-1|BAA86519.1| 1217|Homo sapiens KIAA1205 protein protein.
          Length = 1217

 Score = 26.2 bits (55), Expect(2) = 7.7
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = +2

Query: 611 P*APAPXTSHHFXXXSPQRXRXPTGXXXXPGLXPPPPPP 727
           P  P P         SP     PT     P   PPPPPP
Sbjct: 650 PQPPPPPPPPQPALPSPPPLVAPTPSSPPPPPLPPPPPP 688



 Score = 23.0 bits (47), Expect(2) = 7.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 710 PPPPPPXXTP 739
           PPPPPP   P
Sbjct: 694 PPPPPPAAAP 703


>BC034003-1|AAH34003.1|  600|Homo sapiens PRR12 protein protein.
          Length = 600

 Score = 26.2 bits (55), Expect(2) = 8.2
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = +2

Query: 611 P*APAPXTSHHFXXXSPQRXRXPTGXXXXPGLXPPPPPP 727
           P  P P         SP     PT     P   PPPPPP
Sbjct: 105 PQPPPPPPPPQPALPSPPPLVAPTPSSPPPPPLPPPPPP 143



 Score = 23.0 bits (47), Expect(2) = 8.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 710 PPPPPPXXTP 739
           PPPPPP   P
Sbjct: 149 PPPPPPAAAP 158


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,144,186
Number of Sequences: 237096
Number of extensions: 1201549
Number of successful extensions: 9968
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7995
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 13324901280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)