Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_K09
(993 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.73
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.73
AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like ... 25 3.5
AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like ... 25 3.6
U13875-5|AAA21163.1| 739|Caenorhabditis elegans Set (trithorax/... 25 4.4
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 24 5.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 24 5.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 24 5.6
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 24 5.7
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 24 6.3
Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical pr... 29 6.8
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 24 6.9
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 25 9.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 25 9.9
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 25 9.9
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.9 bits (69), Expect = 0.73
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +2
Query: 602 GVXP*APAPXTSHHFXXXSPQRXRXPTGXXXXPGLXPPPPPPXXTP 739
G+ P P P +S + P G PG+ PPPPP P
Sbjct: 282 GMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGP 327
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.9 bits (69), Expect = 0.73
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +2
Query: 602 GVXP*APAPXTSHHFXXXSPQRXRXPTGXXXXPGLXPPPPPPXXTP 739
G+ P P P +S + P G PG+ PPPPP P
Sbjct: 292 GMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGP 337
>AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform b protein.
Length = 453
Score = 25.0 bits (52), Expect(2) = 3.5
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +2
Query: 698 PGLXPPPPPP 727
P L PPPPPP
Sbjct: 60 PALPPPPPPP 69
Score = 23.0 bits (47), Expect(2) = 3.5
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 710 PPPPPPXXTP 739
PPPPPP P
Sbjct: 63 PPPPPPPPAP 72
>AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform a protein.
Length = 393
Score = 25.0 bits (52), Expect(2) = 3.6
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +2
Query: 698 PGLXPPPPPP 727
P L PPPPPP
Sbjct: 60 PALPPPPPPP 69
Score = 23.0 bits (47), Expect(2) = 3.6
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 710 PPPPPPXXTP 739
PPPPPP P
Sbjct: 63 PPPPPPPPAP 72
>U13875-5|AAA21163.1| 739|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
b protein.
Length = 739
Score = 25.4 bits (53), Expect(2) = 4.4
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 665 RXRXPTGXXXXPGLXPPPPPP 727
R + T P L PPPPPP
Sbjct: 18 RKKVVTVRRVLPSLPPPPPPP 38
Score = 22.2 bits (45), Expect(2) = 4.4
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 710 PPPPPPXXTP 739
PPPPPP P
Sbjct: 34 PPPPPPSLYP 43
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 23.8 bits (49), Expect(2) = 5.4
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +2
Query: 677 PTGXXXXPGLXPPPPPP 727
P G G PPPPPP
Sbjct: 748 PGGLPPISGGPPPPPPP 764
Score = 23.4 bits (48), Expect(2) = 5.4
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +2
Query: 701 GLXPPPPPPXXTP 739
G PPPPPP P
Sbjct: 757 GPPPPPPPPGGCP 769
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 23.8 bits (49), Expect(2) = 5.4
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +2
Query: 677 PTGXXXXPGLXPPPPPP 727
P G G PPPPPP
Sbjct: 748 PGGLPPISGGPPPPPPP 764
Score = 23.4 bits (48), Expect(2) = 5.4
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +2
Query: 701 GLXPPPPPPXXTP 739
G PPPPPP P
Sbjct: 757 GPPPPPPPPGGCP 769
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 23.8 bits (49), Expect(2) = 5.6
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +2
Query: 677 PTGXXXXPGLXPPPPPP 727
P G G PPPPPP
Sbjct: 331 PGGLPPISGGPPPPPPP 347
Score = 23.4 bits (48), Expect(2) = 5.6
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +2
Query: 701 GLXPPPPPPXXTP 739
G PPPPPP P
Sbjct: 340 GPPPPPPPPGGCP 352
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 24.2 bits (50), Expect(2) = 5.7
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +2
Query: 656 SPQRXRXPTGXXXXPGLXPPPPPP 727
+P R P P PPPPPP
Sbjct: 127 NPPRTCCPPPTPAAPPPPPPPPPP 150
Score = 23.0 bits (47), Expect(2) = 5.7
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 710 PPPPPPXXTP 739
PPPPPP P
Sbjct: 143 PPPPPPPPAP 152
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 23.8 bits (49), Expect(2) = 6.3
Identities = 11/34 (32%), Positives = 12/34 (35%)
Frame = +2
Query: 626 PXTSHHFXXXSPQRXRXPTGXXXXPGLXPPPPPP 727
P + HF R P PPPPPP
Sbjct: 62 PVFNIHFNCCGAPRPSPSCCPYVPPAPLPPPPPP 95
Score = 23.4 bits (48), Expect(2) = 6.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 710 PPPPPPXXTP 739
PPPPPP +P
Sbjct: 122 PPPPPPTPSP 131
>Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical
protein K08E3.4 protein.
Length = 643
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/43 (32%), Positives = 16/43 (37%)
Frame = +2
Query: 611 P*APAPXTSHHFXXXSPQRXRXPTGXXXXPGLXPPPPPPXXTP 739
P A P S+ P PT P + PPPP P P
Sbjct: 451 PEAMKPAVSYDAYEEPPAEPAPPTFLAPTPVIAPPPPEPTPAP 493
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 24.2 bits (50), Expect(2) = 6.9
Identities = 10/32 (31%), Positives = 11/32 (34%)
Frame = +2
Query: 632 TSHHFXXXSPQRXRXPTGXXXXPGLXPPPPPP 727
T+ H T P PPPPPP
Sbjct: 1314 TNEHIQANHEDSDSFSTSRSSSPSPPPPPPPP 1345
Score = 22.6 bits (46), Expect(2) = 6.9
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 710 PPPPPPXXTP 739
PPPPPP P
Sbjct: 1339 PPPPPPPPPP 1348
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 24.6 bits (51), Expect(2) = 9.8
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 701 GLXPPPPPPXXTP 739
G PPPPPP +P
Sbjct: 256 GSPPPPPPPKGSP 268
Score = 21.8 bits (44), Expect(2) = 9.8
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 698 PGLXPPPPPP 727
P PPPPPP
Sbjct: 254 PAGSPPPPPP 263
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 24.6 bits (51), Expect(2) = 9.9
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 701 GLXPPPPPPXXTP 739
G PPPPPP +P
Sbjct: 241 GSPPPPPPPKGSP 253
Score = 21.8 bits (44), Expect(2) = 9.9
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 698 PGLXPPPPPP 727
P PPPPPP
Sbjct: 239 PAGSPPPPPP 248
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 24.6 bits (51), Expect(2) = 9.9
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 701 GLXPPPPPPXXTP 739
G PPPPPP +P
Sbjct: 235 GSPPPPPPPKGSP 247
Score = 21.8 bits (44), Expect(2) = 9.9
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 698 PGLXPPPPPP 727
P PPPPPP
Sbjct: 233 PAGSPPPPPP 242
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,580,378
Number of Sequences: 27780
Number of extensions: 137035
Number of successful extensions: 1204
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2594635024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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