Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_K09
(993 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 26 1.8
At1g61080.1 68414.m06877 proline-rich family protein 25 4.0
At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family pr... 25 4.4
At2g47700.1 68415.m05957 zinc finger (C3HC4-type RING finger) fa... 25 5.7
At1g13920.1 68414.m01633 remorin family protein contains Pfam do... 29 6.3
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 24 6.9
At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family... 24 7.0
At3g50140.1 68416.m05481 expressed protein contains Pfam profile... 24 7.1
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 28 8.4
At5g07770.1 68418.m00889 formin homology 2 domain-containing pro... 24 8.9
At3g49300.1 68416.m05388 proline-rich family protein contains pr... 25 9.7
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 25.8 bits (54), Expect(2) = 1.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 677 PTGXXXXPGLXPPPPPP 727
P+ PG PPPPPP
Sbjct: 668 PSARPPLPGGGPPPPPP 684
Score = 23.0 bits (47), Expect(2) = 1.8
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +2
Query: 701 GLXPPPPPPXXTP 739
G PPPPPP P
Sbjct: 678 GPPPPPPPPGGGP 690
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 25.0 bits (52), Expect(2) = 4.0
Identities = 12/36 (33%), Positives = 13/36 (36%)
Frame = +2
Query: 617 APAPXTSHHFXXXSPQRXRXPTGXXXXPGLXPPPPP 724
AP P +P P G G PPPPP
Sbjct: 561 APPPPPPPPMQNRAPSPPPMPMGNSGSGGPPPPPPP 596
Score = 22.6 bits (46), Expect(2) = 4.0
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 701 GLXPPPPPP 727
G PPPPPP
Sbjct: 602 GATPPPPPP 610
>At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 366
Score = 24.6 bits (51), Expect(2) = 4.4
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 701 GLXPPPPPP 727
GL PPPPPP
Sbjct: 288 GLVPPPPPP 296
Score = 23.0 bits (47), Expect(2) = 4.4
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 710 PPPPPPXXTP 739
PPPPPP P
Sbjct: 292 PPPPPPMMVP 301
>At2g47700.1 68415.m05957 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type(RING finger)
Length = 358
Score = 24.6 bits (51), Expect(2) = 5.7
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 701 GLXPPPPPP 727
GL PPPPPP
Sbjct: 298 GLPPPPPPP 306
Score = 22.6 bits (46), Expect(2) = 5.7
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 710 PPPPPPXXTP 739
PPPPPP P
Sbjct: 300 PPPPPPPPMP 309
>At1g13920.1 68414.m01633 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 345
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 659 PQRXRXPTGXXXXPGLXPPPPPPXXTP 739
P R + P P PPPPPP +P
Sbjct: 188 PPRIQPPLRTRSEPRAPPPPPPPLLSP 214
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 24.2 bits (50), Expect(2) = 6.9
Identities = 12/39 (30%), Positives = 13/39 (33%)
Frame = +2
Query: 611 P*APAPXTSHHFXXXSPQRXRXPTGXXXXPGLXPPPPPP 727
P P P + P P P PPPPPP
Sbjct: 469 PPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPPPP 507
Score = 22.6 bits (46), Expect(2) = 6.9
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 710 PPPPPPXXTP 739
PPPPPP P
Sbjct: 537 PPPPPPHSPP 546
>At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family
protein Common family members: At5g26070, At5g19800,
At1g72790 [Arabidopsis thaliana]
Length = 575
Score = 23.8 bits (49), Expect(2) = 7.0
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +2
Query: 677 PTGXXXXPGLXPPPPPP 727
P+ P PPPPPP
Sbjct: 241 PSSPPQQPPATPPPPPP 257
Score = 23.0 bits (47), Expect(2) = 7.0
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 710 PPPPPPXXTP 739
PPPPPP P
Sbjct: 255 PPPPPPVEVP 264
>At3g50140.1 68416.m05481 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 508
Score = 24.2 bits (50), Expect(2) = 7.1
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +2
Query: 698 PGLXPPPPPP 727
P L PPPPPP
Sbjct: 23 PPLPPPPPPP 32
Score = 22.6 bits (46), Expect(2) = 7.1
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 710 PPPPPPXXTP 739
PPPPPP P
Sbjct: 28 PPPPPPPQLP 37
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +2
Query: 620 PAPXTSHHFXXXSPQRXRXPTGXXXXPGLXPPPPPPXXTP 739
P P T +P PT P PPPPP TP
Sbjct: 114 PPPPTVKPPPPPTPYTPPPPTPYTPPPPTVKPPPPPVVTP 153
>At5g07770.1 68418.m00889 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 722
Score = 23.8 bits (49), Expect(2) = 8.9
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +2
Query: 659 PQRXRXPTGXXXXPGLXPPPPPP 727
P R P+ + PPPPPP
Sbjct: 30 PMRRSAPSPPPMSGRVPPPPPPP 52
Score = 22.6 bits (46), Expect(2) = 8.9
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 710 PPPPPPXXTP 739
PPPPPP P
Sbjct: 48 PPPPPPMFDP 57
>At3g49300.1 68416.m05388 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 86
Score = 24.6 bits (51), Expect(2) = 9.7
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +2
Query: 701 GLXPPPPPPXXTP 739
G PPPPPP P
Sbjct: 68 GFPPPPPPPLSPP 80
Score = 22.2 bits (45), Expect(2) = 9.7
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = +2
Query: 659 PQRXRXPTGXXXXPGLXPPPPPP 727
P+ P PG PPPPP
Sbjct: 52 PEPGPDPKHDPTKPGYGFPPPPP 74
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,095,459
Number of Sequences: 28952
Number of extensions: 132739
Number of successful extensions: 1413
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2421636552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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