Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K08
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.49 
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    27   2.6  
SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   6.0  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    26   6.0  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   7.9  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    26   7.9  

>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
 Frame = +3

Query: 492 FSNGEENMTISQVTNGISEIVQQYSGTE-VLNGSDVKIQFRAR-----KDDMLHLYSSFS 653
           + N  E+ T+S + +  S+     S ++ VL    ++I+ R        DD LHL     
Sbjct: 241 YLNSSEDSTLSPLPSRSSDTNDPQSDSQHVLRQERMRIELRQYIKNILNDDELHLTEEVL 300

Query: 654 SFIGEIPLNLNINNAKYMSFGGDLKKITELK 746
           SF+ + P+ L  +    ++F  +L  I +L+
Sbjct: 301 SFLTDDPVTLTASELTDINFRQELDVIRQLE 331


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = +3

Query: 456 DYGNIICKVDVEFSNGEENMTISQVTNGISEIVQ-QYSGTEVLNGSDVKIQFRARKDDML 632
           +YG  I  V+  F     N+      +GI+  +  +Y GT + NG+          D+  
Sbjct: 272 NYGEDISNVNTTFFEASPNV-FGTFDHGINSFIPTEYLGTTLNNGASSNGSCVINYDNFG 330

Query: 633 HLYSSFSSFIGEIPLNLNINNAK 701
            +  + S++  +I  N N ++ K
Sbjct: 331 FMMGASSTYFNKIMRNFNDSSTK 353


>SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 43

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 657 KMKNLNINATYHLFLLETVFSHHC 586
           K K + I   + LF++   FSHHC
Sbjct: 2   KRKIIAIGIFFRLFIIHIHFSHHC 25


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -1

Query: 685 FKFNGISPIKDEKL---EYKCNISSFLARNCIFTSLPFKTSVPEYCCTISLIPLV 530
           ++ + +S IK++ L   +  CNI + LA N I  S+P  +S   Y C  +L  L+
Sbjct: 561 YQISTVSGIKNDPLFTLDQTCNIIAKLADNLIHPSVPIGSSA--YRCRRNLADLL 613


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 666  EIPLNLNINNAKYMSFGGDLKKITELKX*ICLKIAM 773
            ++PL  NIN     S GG+     E+K   CLK+A+
Sbjct: 1334 DVPLVGNINRTTEASSGGEQVDAAEIKD--CLKMAL 1367


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 282 QDINTADSVALNLPVITDKNMFLLPKALSGGDSFTVQGLIQDD 410
           Q ++  +S+A    + +DK   L    LS G+ FTV G+  DD
Sbjct: 359 QKLSAIESLAGVEVLCSDKTGTLTKNKLSLGEPFTVSGVSGDD 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,343,356
Number of Sequences: 5004
Number of extensions: 70045
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)