Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K08
         (862 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25688| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.91 
SB_50833| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.1e-08)       29   3.7  
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)           29   4.9  
SB_5807| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_26235| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  
SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8)            28   8.5  

>SB_25688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 629

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 336 KNMFLLPKALSGGDS--FTVQGLIQDDPKMVTISLIGGIQAPDYG 464
           + +  + KAL+  DS  FTV+G ++ D K V + L  GIQ  D G
Sbjct: 248 RGLTFIDKALALADSKVFTVEGGMRTDRKKVALVLTDGIQTKDRG 292


>SB_50833| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.1e-08)
          Length = 280

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = +3

Query: 420 VTISLIGGIQAPDYGNIICKVDVEFSNGEENMTISQVTNGISEIVQQYSGTEVLNGSD-- 593
           VT   +   +  DYG+ ICKV  E  NG +++TI+ V       V      +++ G+D  
Sbjct: 78  VTTLRVTPYRESDYGDYICKVRNE--NGFDSVTITLVE---QPAVMSQCNKDLVLGADPR 132

Query: 594 VKIQFRARKD 623
           ++++FR R D
Sbjct: 133 LRLEFRPRCD 142


>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
          Length = 417

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 618 KDDMLHLYSSFSSFIGEIPLNLNINNAKYMSFGGDLKKITEL 743
           KD    +  +F  ++G +PL   +NN  +++ GG +  IT+L
Sbjct: 69  KDSRSEIIRTFRKYLGWLPLATIVNNKIFVAHGG-ISNITDL 109


>SB_5807| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 26/95 (27%), Positives = 45/95 (47%)
 Frame = +3

Query: 462 GNIICKVDVEFSNGEENMTISQVTNGISEIVQQYSGTEVLNGSDVKIQFRARKDDMLHLY 641
           GNII  +    SN +  + +   +NG++ I  + S  + L      + F  R +++  L 
Sbjct: 48  GNIISVLPDSISNFKNLVHLDVSSNGLAYISARISELDKL------LTFIGRNNNLDELP 101

Query: 642 SSFSSFIGEIPLNLNINNAKYMSFGGDLKKITELK 746
             F S      LNL+ N  +  SFG  + ++T+LK
Sbjct: 102 KEFGSLAKLEKLNLSGNRLE--SFGPSIFRLTQLK 134


>SB_26235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 406

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 134 LKCKFYHLLMTFKSFF*VDHLLKVHVIKCNQILRIPY 24
           L C +Y      +SF    H+L+ HV++ +Q L IP+
Sbjct: 357 LLCGYYRETFPDESFSPKFHMLEHHVVEIHQALEIPF 393


>SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1265

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 572 SSRVLLHNFANSISYLTNCHIFFTIRKFHINFTDY 468
           S  +L  NF      L+NC IF  +  F  N+ DY
Sbjct: 345 SIEILEANFVARDIILSNCRIFLDLHLFFSNYLDY 379


>SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8)
          Length = 796

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 234 AKPLDNEMLHTNELQNQDINTADSVALNLPVITDKNMFLLPKALSGGDS 380
           ++PLD  ++  N L  +D   A+S+  NLP    +   LL +  S  +S
Sbjct: 398 SEPLDKTLIMRNYLSQEDERFAESLRANLPGYFTEQYLLLQRGNSETNS 446


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,930,002
Number of Sequences: 59808
Number of extensions: 484437
Number of successful extensions: 914
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)