Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K08
         (862 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g35710.1 68414.m04439 leucine-rich repeat transmembrane prote...    31   0.75 
At3g02710.1 68416.m00262 nuclear associated protein-related / NA...    30   2.3  
At5g53100.1 68418.m06597 oxidoreductase, putative similar to for...    29   4.0  
At5g61240.1 68418.m07681 leucine-rich repeat family protein cont...    28   7.0  
At5g23320.1 68418.m02728 isoprenylcysteine carboxyl methyltransf...    28   7.0  
At3g59780.1 68416.m06671 expressed protein                             28   7.0  
At5g27060.1 68418.m03229 disease resistance family protein conta...    28   9.2  
At2g17980.1 68415.m02090 sec1 family protein similar to SWISS-PR...    28   9.2  

>At1g35710.1 68414.m04439 leucine-rich repeat transmembrane protein
           kinase, putative similar to many predicted protein
           kinases
          Length = 1120

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 1/142 (0%)
 Frame = +3

Query: 285 DINTADSVALNLPVITDKNMFLLPKALSGGDSFTVQGLIQDDPKMVTISLIGGIQAPDYG 464
           +I   +S+  NL +  +K    +P +L    + T+  L Q+        L GGI  P  G
Sbjct: 265 EIGNMESMT-NLALSQNKLTGSIPSSLGNLKNLTLLSLFQN-------YLTGGIP-PKLG 315

Query: 465 NIICKVDVEFSNGEENMTISQVTNGISEIVQQYSGTEVLNGSDVKIQFRARKDDMLHLYS 644
           NI   +D+E SN +   +I      +  +   Y     L G  V        + M+ L  
Sbjct: 316 NIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTG--VIPPELGNMESMIDLQL 373

Query: 645 SFSSFIGEIPLNL-NINNAKYM 707
           + +   G IP +  N+ N  Y+
Sbjct: 374 NNNKLTGSIPSSFGNLKNLTYL 395


>At3g02710.1 68416.m00262 nuclear associated protein-related /
           NAP-related similar to Nuclear associated protein (NAP)
           (NYD-SP19) (Swiss-Prot:Q8WYA6) [Homo sapiens]
          Length = 529

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +3

Query: 624 DMLHLYSSFSSFIGEIPLNLNINNAKY 704
           D++ L ++F++F+G+IPLN  I   +Y
Sbjct: 345 DVMGLKTAFAAFMGKIPLNKRIKRERY 371


>At5g53100.1 68418.m06597 oxidoreductase, putative similar to
           forever young oxidoreductase (FEY3) GI:12004621 from
           [Arabidopsis thaliana]
          Length = 364

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = -1

Query: 757 QIXNFNSVIFFKS--PPNDMYFALLIFKFNGISPIKDEKLEYKCNISSFLARNCIFTSLP 584
           +I N NSV+ +     PNDM F     KF+ +S     KL      +  +  N +   LP
Sbjct: 182 RIINVNSVMHYVGFVDPNDMNFVSGKRKFSSLSAYSSSKL------AQVMFNNVLLKKLP 235

Query: 583 FKTSVPEYCCTISLI 539
            +T +   C +  ++
Sbjct: 236 LETGISVVCLSPGVV 250


>At5g61240.1 68418.m07681 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-0B
           [Lycopersicon esculentum] gi|3894387|gb|AAC78593
          Length = 380

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 627 MLHLYSSFSSFIGEIPLNL 683
           + HLY SF+SF GEIP  L
Sbjct: 201 LTHLYLSFNSFKGEIPKEL 219


>At5g23320.1 68418.m02728 isoprenylcysteine carboxyl
           methyltransferase family protein / ICMT family protein
           similar to SP|O12947 Protein-S isoprenylcysteine
           O-methyltransferase (EC 2.1.1.100) (Isoprenylcysteine
           carboxylmethyltransferase) (Farnesyl cysteine carboxyl
           methyltransferase) (FCMT) {Xenopus laevis}; contains
           Pfam profile PF04140: Isoprenylcysteine carboxyl
           methyltransferase (ICMT) family
          Length = 197

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 519 LSYFLHH*KIPHQLYRLYFHNQVLGFLL-SKKLSPFLGHPVS 397
           ++Y  HH  + H +YRL  H    GFL+ S      L +PVS
Sbjct: 110 INYEEHHGLVTHGVYRLMRHPSYCGFLIWSVGTQVMLCNPVS 151


>At3g59780.1 68416.m06671 expressed protein 
          Length = 610

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 528 VTNGISEIVQQYSGTEVLNGSDVKIQFRARKDDMLHLYSSFSSFIGEI 671
           VTNG+S +V  Y   + L   DVK    + +D  L + S   + + ++
Sbjct: 213 VTNGVSFVVYSYGSAKELLPPDVKSALNSSEDVALKVLSPVGAVLQQV 260


>At5g27060.1 68418.m03229 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 957

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
 Frame = +3

Query: 270 ELQNQDINTADSVALNLPVITDKNMFLLPKALSGGD-SFTVQGLIQDDPKMVTISL-IGG 443
           +L    +NT   + LN  +   K + LL   LSG   S T +  + D P  +  SL + G
Sbjct: 439 DLNISHLNTTTRIDLNYFLSYFKRLLLLD--LSGNHVSATNKSSVSDPPSQLIQSLYLSG 496

Query: 444 IQAPDYGNII-CKVDVEFSNGEENMTISQVTNGISEIVQQYSGTEVLNGSDVKIQFRARK 620
               ++   +  + ++ F +   N    QV + +  +   Y    + N + +  Q  ++ 
Sbjct: 497 CGITEFPEFVRTQHELGFLDISNNKIKGQVPDWLWRLPILYY-VNLSNNTLIGFQRPSKP 555

Query: 621 D-DMLHLYSSFSSFIGEIP 674
           +  +L+L  S ++FIG+IP
Sbjct: 556 EPSLLYLLGSNNNFIGKIP 574


>At2g17980.1 68415.m02090 sec1 family protein similar to
           SWISS-PROT:P22213 SLY1 protein [Saccharomyces
           cerevisiae]; contains Pfam domain, PF00995: Sec1 family
          Length = 627

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 836 HTHFTIISLCELTANKKYICKHSNFQT 756
           H   T+ SL ELT  KK I KH+N  T
Sbjct: 351 HLMNTVKSLPELTERKKVIDKHTNIAT 377


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,755,313
Number of Sequences: 28952
Number of extensions: 341444
Number of successful extensions: 713
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)