Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K06
         (877 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...   131   8e-33
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   3.1  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    22   7.3  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   9.6  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score =  131 bits (316), Expect = 8e-33
 Identities = 63/157 (40%), Positives = 97/157 (61%), Gaps = 2/157 (1%)
 Frame = +3

Query: 162 VIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLE 335
           ++HWFR  LR+HDN +LR  +  A       R ++ LDP       VGIN+ RFLLQ LE
Sbjct: 19  MVHWFRRGLRLHDNPSLREGLKGART----FRCVFVLDPWFAGSSNVGINKWRFLLQCLE 74

Query: 336 DLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKK 515
           DLD +L+KLN+ L+V+RG+  D LPKLF +W    LT + D +P    +D  +  + ++ 
Sbjct: 75  DLDRSLRKLNSRLFVIRGQPADALPKLFKEWGTTALTFEEDPEPFGGVRDHNLTTLCQEL 134

Query: 516 GVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLV 626
           G+ + ++V HT+Y +  ++  N G  PLTY +FL+++
Sbjct: 135 GISVVQKVSHTLYHLQDIIDRNGGRAPLTYHQFLAII 171


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 521 YTFLLSNVFNVFILLYKLRIYIHLT 447
           YT     +  V   L+K RIYI +T
Sbjct: 642 YTTTEKELLGVIFALHKFRIYIQVT 666


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 581 VLSQNFMYIINCMLYSLVNEYTFLLSNVFNVFILLYKL 468
           +  +NF  I   ++ S V+ + FLL ++  V I   KL
Sbjct: 378 ITGKNFFSITRGLILSFVDYFVFLLCSIL-VNIAFIKL 414


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -1

Query: 724 WVYYSLPDCISIGLQWL 674
           WV Y  P+ + I + W+
Sbjct: 342 WVGYEDPESVQIKMDWI 358


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,831
Number of Sequences: 336
Number of extensions: 3738
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)