Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_K06
(877 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10209| Best HMM Match : No HMM Matches (HMM E-Value=.) 125 4e-29
SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0) 117 1e-26
SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0) 116 3e-26
SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39) 115 6e-26
SB_6930| Best HMM Match : FAD_binding_7 (HMM E-Value=0) 109 4e-24
SB_36192| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 2e-21
SB_51314| Best HMM Match : FAD_binding_7 (HMM E-Value=0) 40 0.003
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.70
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.70
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_10209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 798
Score = 125 bits (302), Expect = 4e-29
Identities = 65/168 (38%), Positives = 101/168 (60%), Gaps = 3/168 (1%)
Frame = +3
Query: 162 VIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPN-IKDK-VGINRLRFLLQSLE 335
VIHWFR DLR+HDN AL + + +Y LDPN IK V NR FLLQ L
Sbjct: 354 VIHWFRKDLRLHDNPALLDGLKNCR----AFYGVYILDPNNIKAAIVSANRWNFLLQCLA 409
Query: 336 DLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKK 515
DLD+NLKK T LYV RG+ + P++F++W + LT + + +P ++D I+ +AE+
Sbjct: 410 DLDNNLKKCGTRLYVFRGQPTTVFPQMFNEWNITKLTFESECEPFGQRRDVAIQSLAEEF 469
Query: 516 GVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINVKE-PIE 656
GV ++ + H++Y + ++L N G P+ ++ F ++V+ + E P+E
Sbjct: 470 GVKVSCKPSHSLYSIEQILEMNEGKPPVLFKDFEAIVRKLGPPENPVE 517
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/78 (34%), Positives = 48/78 (61%)
Frame = +3
Query: 396 VDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKGVFINKRVQHTVYDVHKVLR 575
+D+ PKL W + LT + D +P Q+D ++ IAEK GV + HT+YD+ ++
Sbjct: 4 IDVCPKLIKQWNISRLTFEYDSEPFPRQRDLAVKRIAEKAGVDVIVCSSHTLYDIEWMIG 63
Query: 576 ENNGAVPLTYQKFLSLVK 629
+N+G P+T+++F L++
Sbjct: 64 KNDGLPPITFKQFQKLLQ 81
>SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
Length = 1074
Score = 117 bits (281), Expect = 1e-26
Identities = 64/169 (37%), Positives = 96/169 (56%), Gaps = 4/169 (2%)
Frame = +3
Query: 165 IHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGI--NRLRFLLQSLED 338
+HWFR DLR+HDN AL + + +YFLDP + + NR FLL+SL D
Sbjct: 200 MHWFRKDLRLHDNPALLESFKNCQ----AFYGVYFLDPASVQRSNLSPNRWWFLLESLRD 255
Query: 339 LDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKG 518
LD NL+ L + L V+RG+ V +PKL D W +K LT + D +P Q+D + +A+ G
Sbjct: 256 LDYNLRSLGSRLLVVRGQPVQEMPKLLDQWNIKRLTLEYDSEPPAKQRDAVVTHLAKNLG 315
Query: 519 VFINKRVQHTVYDVHKVLRE-NNGAVPLTYQKFLSLVKSI-NVKEPIEI 659
V + +RV HT+YDV V E T+ FL+ + + + +EP+++
Sbjct: 316 VEVIQRVSHTLYDVETVFEELYESDSYATWDGFLTFIDKLGSPEEPVDL 364
Score = 116 bits (279), Expect = 3e-26
Identities = 59/161 (36%), Positives = 93/161 (57%), Gaps = 2/161 (1%)
Frame = +3
Query: 159 TVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIK--DKVGINRLRFLLQSL 332
T +HWFR DLR+HDN +L +++ PIY LD K+ NR FL + L
Sbjct: 695 TSVHWFRKDLRLHDNPSLLASLDNCST----FFPIYVLDMESARASKISANRWNFLCECL 750
Query: 333 EDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEK 512
E LD L+ L + L+V+RG+A+D+LP+LF +W V LT + + +P Q+D I+ +AEK
Sbjct: 751 EALDRQLRVLGSRLFVIRGRAMDVLPRLFHEWSVNRLTFERESEPAGRQRDAVIQMLAEK 810
Query: 513 KGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSI 635
V + + H +YD +VL N+G +P+T+ + + +
Sbjct: 811 ANVQVLQHNAHLLYDTDEVLETNDGKLPMTFDEMAKTAEQL 851
>SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
Length = 1291
Score = 116 bits (278), Expect = 3e-26
Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 2/164 (1%)
Frame = +3
Query: 150 KTATVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIK--DKVGINRLRFLL 323
K T +HWFR DLR+HDN +L +++ PIY LD K+ NR FL
Sbjct: 222 KGCTSVHWFRKDLRLHDNPSLLASLDNCST----FFPIYVLDMESARASKISANRWNFLC 277
Query: 324 QSLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDI 503
+ LE LD L+ L + L+V+RG+A+D+LP+LF +W V LT + + +P Q+D I+ +
Sbjct: 278 ECLEALDRQLRVLGSRLFVIRGRAIDVLPRLFHEWSVNRLTFERESEPAGRQRDTVIQML 337
Query: 504 AEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSI 635
AE V + + H +YD +VL N+G +P+T+ + + +
Sbjct: 338 AENANVQLLQHNAHLLYDTDEVLETNDGKLPMTFDEMAKTAEQL 381
Score = 114 bits (274), Expect = 1e-25
Identities = 63/182 (34%), Positives = 95/182 (52%), Gaps = 4/182 (2%)
Frame = +3
Query: 150 KTATVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI---KDKVGINRLRFL 320
KT +HWFR DLR+HDN +L A++ +++ +YFLDP+I KV L FL
Sbjct: 715 KTHNTMHWFRKDLRLHDNPSLLKALSGSQS----FYGVYFLDPDILAPSSKVSPRTLDFL 770
Query: 321 LQSLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIED 500
LQ L DLD L+ + L+V+R A+ LP L W + ++ + D DP V +D +
Sbjct: 771 LQCLRDLDDRLRGYGSRLFVIRECALSALPGLLKKWDITRMSFEADQDPHAVTRDVVAKQ 830
Query: 501 IAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINVKEPI-EISNVLSS 677
IA GV + V HT++D + + G +P + F V S+ V+ P+ E+ L
Sbjct: 831 IAAGLGVEVISEVSHTIFDTVDIREASGGLMPQDFPSFQRAVSSLEVRTPVKEVDGSLIR 890
Query: 678 HC 683
C
Sbjct: 891 QC 892
>SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39)
Length = 432
Score = 115 bits (276), Expect = 6e-26
Identities = 60/175 (34%), Positives = 97/175 (55%)
Frame = +3
Query: 159 TVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFLLQSLED 338
T HWFR DLR+HDN AL++A++ A+ ++ L NR +FLLQ L+D
Sbjct: 7 TSCHWFRKDLRLHDNPALKDALDNAD----CFYGVFVLSNFHPSITSGNRWKFLLQCLQD 62
Query: 339 LDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKG 518
L+++L++L + L +L G V++ PKL +V LT +VD +P Q+D I IA G
Sbjct: 63 LNNSLEELGSKLIILTGSPVEIFPKLLHSLKVTKLTFEVDTEPFAQQRDSVISHIARSAG 122
Query: 519 VFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINVKEPIEISNVLSSHC 683
+ + HT+YD+ ++ N +PL + +FL ++ I++ PI + V C
Sbjct: 123 IEVKTHASHTLYDIESLVSHCNENIPLVFDEFLEMISGISL-PPIPVLEVKQVPC 176
>SB_6930| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
Length = 506
Score = 109 bits (261), Expect = 4e-24
Identities = 52/117 (44%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Frame = +3
Query: 216 NAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLEDLDSNLKKLNTCLYVLRG 389
+A+ EA +RP+Y LDP++ +G+ R RF+L+SL DLD+NLKKLN+ L+V+RG
Sbjct: 57 SALKEAFETSQTVRPLYVLDPDVLKNGNIGVVRWRFILESLADLDNNLKKLNSRLFVVRG 116
Query: 390 KAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKGVFINKRVQHTVYDV 560
+ ++ PKLF +W++ LT +VD +QD + IA K GV I +RV HT+YD+
Sbjct: 117 RPSEVFPKLFKEWKISKLTFEVDTTEPARKQDAEVLKIANKLGVDIEQRVSHTLYDL 173
>SB_36192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 99 bits (238), Expect = 2e-21
Identities = 70/196 (35%), Positives = 104/196 (53%), Gaps = 26/196 (13%)
Frame = +3
Query: 141 KMSKTATVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPN--IKDKVGINRLR 314
K KT+ IHW R LRIHDN ALR+A+ R +Y LD +G+N R
Sbjct: 13 KAKKTSHSIHWLRKGLRIHDNPALRDAVLNWGT----FRVVYILDTKSVASSNIGLNLWR 68
Query: 315 FLLQSLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYI 494
FLLQ+LEDLD +L+KLN+ L+V+RG+ D+ P+LF +W + LT + D +P F +++ +
Sbjct: 69 FLLQALEDLDDSLRKLNSRLFVIRGQPADVFPRLFREWGITRLTFEEDSEP-FGRRETLL 127
Query: 495 ----EDIAEKKG------VFINKRVQHTVYDVHKVL--------------RENNGAVPLT 602
E K +FI + ++ ++ KVL N G PLT
Sbjct: 128 FACWRGKPELKSPLIDLTLFITCKDLESMTELLKVLVILYYPLPPGAQIIDRNGGTPPLT 187
Query: 603 YQKFLSLVKSINVKEP 650
Y+KFLS+++ I +P
Sbjct: 188 YKKFLSVIEGIAPPDP 203
>SB_51314| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
Length = 524
Score = 39.5 bits (88), Expect = 0.003
Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 13/169 (7%)
Frame = +3
Query: 147 SKTA-TVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPN--------IKDKVG 299
SKT TVI R DLR HDN AL A A+ + P+Y DP+ K
Sbjct: 4 SKTQKTVICLLRNDLRYHDNEALLWAHKNAD----FVLPLYCFDPDHYKTTWRFSLPKTA 59
Query: 300 INRLRFLLQSLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQ----VKYLTCQVDIDP 467
R +FLL+S+ DL S L+ + L + + + ++ + KL + + V + Q ++
Sbjct: 60 QYRAKFLLESVTDLRSTLQIHGSNLIIRQCQPLEAVTKLTELLKPVAPVTSIVFQQEVTY 119
Query: 468 EFVQQDEYIEDIAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKF 614
E + ++ + + +K G+ ++ T++ + + VP TY +F
Sbjct: 120 EELNVEKALVEFCKKSGIHMHTIWGSTLFHKDDIPYKAK-TVPDTYTQF 167
>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3003
Score = 31.9 bits (69), Expect = 0.70
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Frame = +3
Query: 450 QVDIDPEFVQQDEYIEDIAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVK 629
QV DP F + I IA+K+G+ ++ +Q DV +VL E++ L F++ VK
Sbjct: 2500 QVSNDPRFDSYAQEITQIAKKQGLKVDLHMQEYSLDVTEVLDESSVEGNLVLD-FMTQVK 2558
Query: 630 SI-----NVKEPIEISNVLSS 677
NV E + + LSS
Sbjct: 2559 GFRALTENVHEILSLIEELSS 2579
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 31.9 bits (69), Expect = 0.70
Identities = 24/102 (23%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Frame = +3
Query: 303 NRLRFLLQ-SLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQ 479
N+ +F L+ +L++ + LK L+ Y + +D+L K DD Q + ++ +D E +
Sbjct: 809 NQRKFELEKALDEANKELKPLSD-KYDRASRDLDILQKTLDDTQSRLANAEMTLDAETSK 867
Query: 480 QDEYIEDIAE------KKGVFINKRVQHTVYDVHKVLRENNG 587
+ + ED+ + +K +NK + + ++ +L NG
Sbjct: 868 KKQLQEDLDDAMEDLHEKDTELNK-TKRKLQELQAILESGNG 908
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -3
Query: 587 SIVLSQNFMYIINCMLYSLVNEYTFLLSNVFNVFILLYKLRIYIHLTC 444
++ +S F+Y+ +++L FL VF L LR+YI + C
Sbjct: 2010 ALSVSLRFLYLCAICIFALSVSLRFLYLCAIFVFALSLSLRLYISVPC 2057
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,427,117
Number of Sequences: 59808
Number of extensions: 400079
Number of successful extensions: 868
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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