Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_K06
(877 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF015898-1|ABM64209.1| 586|Homo sapiens photolyase-like cryptoc... 149 2e-35
D84657-1|BAA12710.1| 586|Homo sapiens photolyase homolog protein. 149 2e-35
D83702-1|BAA12068.1| 586|Homo sapiens photolyase protein. 149 2e-35
BC030519-1|AAH30519.1| 586|Homo sapiens cryptochrome 1 (photoly... 149 2e-35
EF015899-1|ABM64210.1| 593|Homo sapiens photolyase-like cryptoc... 137 6e-32
BC041814-1|AAH41814.1| 593|Homo sapiens cryptochrome 2 (photoly... 137 6e-32
AB014558-1|BAA31633.1| 589|Homo sapiens KIAA0658 protein protein. 137 6e-32
BC035161-1|AAH35161.1| 461|Homo sapiens CRY2 protein protein. 38 0.063
BC127816-1|AAI27817.1| 416|Homo sapiens Unknown (protein for IM... 31 7.2
AK097517-1|BAC05084.1| 621|Homo sapiens protein ( Homo sapiens ... 31 7.2
>EF015898-1|ABM64209.1| 586|Homo sapiens photolyase-like
cryptochrome 1 protein.
Length = 586
Score = 149 bits (360), Expect = 2e-35
Identities = 73/167 (43%), Positives = 109/167 (65%), Gaps = 2/167 (1%)
Frame = +3
Query: 165 IHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLED 338
+HWFR LR+HDN AL+ I A+ +R +Y LDP VGINR RFLLQ LED
Sbjct: 6 VHWFRKGLRLHDNPALKECIQGADT----IRCVYILDPWFAGSSNVGINRWRFLLQCLED 61
Query: 339 LDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKG 518
LD+NL+KLN+ L+V+RG+ D+ P+LF +W + L+ + D +P ++D I+ +A + G
Sbjct: 62 LDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAG 121
Query: 519 VFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINVKEPIEI 659
V + R+ HT+YD+ K++ N G PLTY++F +L+ + EP+EI
Sbjct: 122 VEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM---EPLEI 165
>D84657-1|BAA12710.1| 586|Homo sapiens photolyase homolog protein.
Length = 586
Score = 149 bits (360), Expect = 2e-35
Identities = 73/167 (43%), Positives = 109/167 (65%), Gaps = 2/167 (1%)
Frame = +3
Query: 165 IHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLED 338
+HWFR LR+HDN AL+ I A+ +R +Y LDP VGINR RFLLQ LED
Sbjct: 6 VHWFRKGLRLHDNPALKECIQGADT----IRCVYILDPWFAGSSNVGINRWRFLLQCLED 61
Query: 339 LDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKG 518
LD+NL+KLN+ L+V+RG+ D+ P+LF +W + L+ + D +P ++D I+ +A + G
Sbjct: 62 LDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAG 121
Query: 519 VFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINVKEPIEI 659
V + R+ HT+YD+ K++ N G PLTY++F +L+ + EP+EI
Sbjct: 122 VEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM---EPLEI 165
>D83702-1|BAA12068.1| 586|Homo sapiens photolyase protein.
Length = 586
Score = 149 bits (360), Expect = 2e-35
Identities = 73/167 (43%), Positives = 109/167 (65%), Gaps = 2/167 (1%)
Frame = +3
Query: 165 IHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLED 338
+HWFR LR+HDN AL+ I A+ +R +Y LDP VGINR RFLLQ LED
Sbjct: 6 VHWFRKGLRLHDNPALKECIQGADT----IRCVYILDPWFAGSSNVGINRWRFLLQCLED 61
Query: 339 LDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKG 518
LD+NL+KLN+ L+V+RG+ D+ P+LF +W + L+ + D +P ++D I+ +A + G
Sbjct: 62 LDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAG 121
Query: 519 VFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINVKEPIEI 659
V + R+ HT+YD+ K++ N G PLTY++F +L+ + EP+EI
Sbjct: 122 VEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM---EPLEI 165
>BC030519-1|AAH30519.1| 586|Homo sapiens cryptochrome 1
(photolyase-like) protein.
Length = 586
Score = 149 bits (360), Expect = 2e-35
Identities = 73/167 (43%), Positives = 109/167 (65%), Gaps = 2/167 (1%)
Frame = +3
Query: 165 IHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLED 338
+HWFR LR+HDN AL+ I A+ +R +Y LDP VGINR RFLLQ LED
Sbjct: 6 VHWFRKGLRLHDNPALKECIQGADT----IRCVYILDPWFAGSSNVGINRWRFLLQCLED 61
Query: 339 LDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKG 518
LD+NL+KLN+ L+V+RG+ D+ P+LF +W + L+ + D +P ++D I+ +A + G
Sbjct: 62 LDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAG 121
Query: 519 VFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINVKEPIEI 659
V + R+ HT+YD+ K++ N G PLTY++F +L+ + EP+EI
Sbjct: 122 VEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM---EPLEI 165
>EF015899-1|ABM64210.1| 593|Homo sapiens photolyase-like
cryptochrome 2 protein.
Length = 593
Score = 137 bits (331), Expect = 6e-32
Identities = 70/170 (41%), Positives = 109/170 (64%), Gaps = 3/170 (1%)
Frame = +3
Query: 153 TATVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDP--NIKDKVGINRLRFLLQ 326
+A+ +HWFR LR+HDN AL A+ A +R +Y LDP VGINR RFLLQ
Sbjct: 21 SASSVHWFRKGLRLHDNPALLAAVRGAR----CVRCVYILDPWFAASSSVGINRWRFLLQ 76
Query: 327 SLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIA 506
SLEDLD++L+KLN+ L+V+RG+ D+ P+LF +W V LT + D +P ++D I +A
Sbjct: 77 SLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMA 136
Query: 507 EKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINV-KEPI 653
++ GV + HT+YD+ +++ N PLTY++F +++ + + K+P+
Sbjct: 137 KEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPV 186
>BC041814-1|AAH41814.1| 593|Homo sapiens cryptochrome 2
(photolyase-like) protein.
Length = 593
Score = 137 bits (331), Expect = 6e-32
Identities = 70/170 (41%), Positives = 109/170 (64%), Gaps = 3/170 (1%)
Frame = +3
Query: 153 TATVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDP--NIKDKVGINRLRFLLQ 326
+A+ +HWFR LR+HDN AL A+ A +R +Y LDP VGINR RFLLQ
Sbjct: 21 SASSVHWFRKGLRLHDNPALLAAVRGAR----CVRCVYILDPWFAASSSVGINRWRFLLQ 76
Query: 327 SLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIA 506
SLEDLD++L+KLN+ L+V+RG+ D+ P+LF +W V LT + D +P ++D I +A
Sbjct: 77 SLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMA 136
Query: 507 EKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINV-KEPI 653
++ GV + HT+YD+ +++ N PLTY++F +++ + + K+P+
Sbjct: 137 KEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPV 186
>AB014558-1|BAA31633.1| 589|Homo sapiens KIAA0658 protein protein.
Length = 589
Score = 137 bits (331), Expect = 6e-32
Identities = 70/170 (41%), Positives = 109/170 (64%), Gaps = 3/170 (1%)
Frame = +3
Query: 153 TATVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDP--NIKDKVGINRLRFLLQ 326
+A+ +HWFR LR+HDN AL A+ A +R +Y LDP VGINR RFLLQ
Sbjct: 17 SASSVHWFRKGLRLHDNPALLAAVRGAR----CVRCVYILDPWFAASSSVGINRWRFLLQ 72
Query: 327 SLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIA 506
SLEDLD++L+KLN+ L+V+RG+ D+ P+LF +W V LT + D +P ++D I +A
Sbjct: 73 SLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMA 132
Query: 507 EKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINV-KEPI 653
++ GV + HT+YD+ +++ N PLTY++F +++ + + K+P+
Sbjct: 133 KEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPV 182
>BC035161-1|AAH35161.1| 461|Homo sapiens CRY2 protein protein.
Length = 461
Score = 37.5 bits (83), Expect = 0.063
Identities = 15/52 (28%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +3
Query: 501 IAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINV-KEPI 653
+A++ GV + HT+YD+ +++ N PLTY++F +++ + + K+P+
Sbjct: 3 MAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPV 54
>BC127816-1|AAI27817.1| 416|Homo sapiens Unknown (protein for
IMAGE:40131779) protein.
Length = 416
Score = 30.7 bits (66), Expect = 7.2
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Frame = +3
Query: 300 INRLRFLLQSLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQV--DIDPEF 473
++ +R L +L L + L G+A DL+ +L D W+ Q + +
Sbjct: 87 VHTIRILTCQKTELQMALYYSQHAVKQLEGEARDLISRLHDSWKFAGELEQALSAVATQK 146
Query: 474 VQQDEYIEDIAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKS------I 635
+ D YIE++ +++ + ++T+ D + L+E N + Q+ L LV+S +
Sbjct: 147 KKADRYIEELTKERDALSLELYRNTITD--EELKEKNAKL----QEKLQLVESEKSEIQL 200
Query: 636 NVKE 647
NVKE
Sbjct: 201 NVKE 204
>AK097517-1|BAC05084.1| 621|Homo sapiens protein ( Homo sapiens
cDNA FLJ40198 fis, clone TESTI2019975, weakly similar to
TRICHOHYALIN. ).
Length = 621
Score = 30.7 bits (66), Expect = 7.2
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Frame = +3
Query: 300 INRLRFLLQSLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQV--DIDPEF 473
++ +R L +L L + L G+A DL+ +L D W+ Q + +
Sbjct: 123 VHTIRILTCQKTELQMALYYSQHAVKQLEGEARDLISRLHDSWKFAGELEQALSAVATQK 182
Query: 474 VQQDEYIEDIAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKS------I 635
+ D YIE++ +++ + ++T+ D + L+E N + Q+ L LV+S +
Sbjct: 183 KKADRYIEELTKERDALSLELYRNTITD--EELKEKNAKL----QEKLQLVESEKSEIQL 236
Query: 636 NVKE 647
NVKE
Sbjct: 237 NVKE 240
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,326,456
Number of Sequences: 237096
Number of extensions: 2030910
Number of successful extensions: 6860
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6853
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11159604822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -