Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_K06
(877 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014134-3257|AAF53904.1| 540|Drosophila melanogaster CG2488-PB... 160 2e-39
AE014134-3256|AAN11080.1| 540|Drosophila melanogaster CG2488-PA... 160 2e-39
AY089584-1|AAL90322.1| 540|Drosophila melanogaster RE11660p pro... 160 3e-39
D83701-1|BAA12067.1| 540|Drosophila melanogaster photolyase pro... 158 8e-39
AY051514-1|AAK92938.1| 542|Drosophila melanogaster GH16672p pro... 90 3e-18
AF099734-1|AAC83828.1| 542|Drosophila melanogaster cryptochrome... 90 3e-18
AE014297-2641|AAF55649.1| 542|Drosophila melanogaster CG3772-PA... 90 3e-18
AB019389-1|BAA35000.1| 542|Drosophila melanogaster blue light p... 90 3e-18
AB018400-1|BAA33787.1| 542|Drosophila melanogaster blue-light r... 90 3e-18
S73530-1|AAB32328.1| 536|Drosophila melanogaster phr protein. 46 5e-05
D26021-1|BAA05042.1| 640|Drosophila melanogaster photolyase pro... 46 5e-05
AY084133-1|AAL89871.1| 555|Drosophila melanogaster RE21178p pro... 46 5e-05
AE013599-515|AAM68868.1| 535|Drosophila melanogaster CG11205-PB... 46 5e-05
AE013599-514|AAF59185.1| 555|Drosophila melanogaster CG11205-PA... 46 5e-05
AY069793-1|AAL39938.1| 894|Drosophila melanogaster SD03467p pro... 29 6.4
AE014134-605|AAF51106.1| 894|Drosophila melanogaster CG8843-PA ... 29 6.4
>AE014134-3257|AAF53904.1| 540|Drosophila melanogaster CG2488-PB,
isoform B protein.
Length = 540
Score = 160 bits (389), Expect = 2e-39
Identities = 76/185 (41%), Positives = 119/185 (64%), Gaps = 4/185 (2%)
Frame = +3
Query: 147 SKTATVIHWFRLDLRIHDNLALRNAINEAENR--KHLLRPIYFLDPNIKD--KVGINRLR 314
S+ +T++HWFR LR+HDN AL + A K+ +RPI+ LDP I D +VG NR R
Sbjct: 3 SQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWR 62
Query: 315 FLLQSLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYI 494
FL Q+LEDLD+ L+KLN+ L+V+RGK ++ P++F W+V+ LT + DI+P V +D +
Sbjct: 63 FLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAV 122
Query: 495 EDIAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINVKEPIEISNVLS 674
+ +A+ +GV + HT+Y+ V+ +N G P+TYQKFL +V+ + V + + + L
Sbjct: 123 QKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKLK 182
Query: 675 SHCKP 689
+ P
Sbjct: 183 NMPTP 187
>AE014134-3256|AAN11080.1| 540|Drosophila melanogaster CG2488-PA,
isoform A protein.
Length = 540
Score = 160 bits (389), Expect = 2e-39
Identities = 76/185 (41%), Positives = 119/185 (64%), Gaps = 4/185 (2%)
Frame = +3
Query: 147 SKTATVIHWFRLDLRIHDNLALRNAINEAENR--KHLLRPIYFLDPNIKD--KVGINRLR 314
S+ +T++HWFR LR+HDN AL + A K+ +RPI+ LDP I D +VG NR R
Sbjct: 3 SQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWR 62
Query: 315 FLLQSLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYI 494
FL Q+LEDLD+ L+KLN+ L+V+RGK ++ P++F W+V+ LT + DI+P V +D +
Sbjct: 63 FLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAV 122
Query: 495 EDIAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINVKEPIEISNVLS 674
+ +A+ +GV + HT+Y+ V+ +N G P+TYQKFL +V+ + V + + + L
Sbjct: 123 QKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKLK 182
Query: 675 SHCKP 689
+ P
Sbjct: 183 NMPTP 187
>AY089584-1|AAL90322.1| 540|Drosophila melanogaster RE11660p
protein.
Length = 540
Score = 160 bits (388), Expect = 3e-39
Identities = 78/186 (41%), Positives = 121/186 (65%), Gaps = 5/186 (2%)
Frame = +3
Query: 147 SKTATVIHWFRLDLRIHDNLALRN---AINEAENRKHLLRPIYFLDPNIKD--KVGINRL 311
S+ +T++HWFR LR+HDN AL + A N A R + +RPI+ LDP I D +VG NR
Sbjct: 3 SQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGR-YFVRPIFILDPGILDWMQVGANRW 61
Query: 312 RFLLQSLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEY 491
RFL Q+LEDLD+ L+KLN+ L+V+RGK ++ P++F W+V+ LT + DI+P V +D
Sbjct: 62 RFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAA 121
Query: 492 IEDIAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINVKEPIEISNVL 671
++ +A+ +GV + HT+Y+ V+ +N G P+TYQKFL +V+ + V + + + L
Sbjct: 122 VQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKL 181
Query: 672 SSHCKP 689
+ P
Sbjct: 182 KNMPTP 187
>D83701-1|BAA12067.1| 540|Drosophila melanogaster photolyase
protein.
Length = 540
Score = 158 bits (384), Expect = 8e-39
Identities = 76/185 (41%), Positives = 117/185 (63%), Gaps = 4/185 (2%)
Frame = +3
Query: 147 SKTATVIHWFRLDLRIHDNLALRNAINEAENR--KHLLRPIYFLDPNIKD--KVGINRLR 314
S+ +T++HWFR LR+HDN AL + A K+ +RPI+ LDP I D +VG NR R
Sbjct: 3 SQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWR 62
Query: 315 FLLQSLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYI 494
FL Q+LEDLD+ L+KLN+ L+V+RGK ++ P++F W+V+ LT + DI+P V +D +
Sbjct: 63 FLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAV 122
Query: 495 EDIAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINVKEPIEISNVLS 674
+ +A+ +GV + HT+Y+ V +N G P+TYQKFL +V+ + V + + + L
Sbjct: 123 QKLAKAEGVRVETHCSHTIYNPELVKAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKLK 182
Query: 675 SHCKP 689
P
Sbjct: 183 KMPTP 187
>AY051514-1|AAK92938.1| 542|Drosophila melanogaster GH16672p
protein.
Length = 542
Score = 90.2 bits (214), Expect = 3e-18
Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 5/170 (2%)
Frame = +3
Query: 147 SKTATVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFL 320
++ A VI WFR LR+HDN AL A+ + + L+ P++ D VG NR+RFL
Sbjct: 3 TRGANVI-WFRHGLRLHDNPALLAALADKDQGIALI-PVFIFDGESAGTKNVGYNRMRFL 60
Query: 321 LQSLEDLDSNLKKLNT---CLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEY 491
L SL+D+D L+ L V G+ + +L + ++ + + D +P + ++DE
Sbjct: 61 LDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDES 120
Query: 492 IEDIAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINV 641
I + + + ++V HT++D V+ N G PLTYQ FL V+ I +
Sbjct: 121 IRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGL 170
>AF099734-1|AAC83828.1| 542|Drosophila melanogaster cryptochrome
protein.
Length = 542
Score = 90.2 bits (214), Expect = 3e-18
Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 5/170 (2%)
Frame = +3
Query: 147 SKTATVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFL 320
++ A VI WFR LR+HDN AL A+ + + L+ P++ D VG NR+RFL
Sbjct: 3 TRGANVI-WFRHGLRLHDNPALLAALADKDQGIALI-PVFIFDGESAGTKNVGYNRMRFL 60
Query: 321 LQSLEDLDSNLKKLNT---CLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEY 491
L SL+D+D L+ L V G+ + +L + ++ + + D +P + ++DE
Sbjct: 61 LDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDES 120
Query: 492 IEDIAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINV 641
I + + + ++V HT++D V+ N G PLTYQ FL V+ I +
Sbjct: 121 IRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGL 170
>AE014297-2641|AAF55649.1| 542|Drosophila melanogaster CG3772-PA
protein.
Length = 542
Score = 90.2 bits (214), Expect = 3e-18
Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 5/170 (2%)
Frame = +3
Query: 147 SKTATVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFL 320
++ A VI WFR LR+HDN AL A+ + + L+ P++ D VG NR+RFL
Sbjct: 3 TRGANVI-WFRHGLRLHDNPALLAALADKDQGIALI-PVFIFDGESAGTKNVGYNRMRFL 60
Query: 321 LQSLEDLDSNLKKLNT---CLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEY 491
L SL+D+D L+ L V G+ + +L + ++ + + D +P + ++DE
Sbjct: 61 LDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDES 120
Query: 492 IEDIAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINV 641
I + + + ++V HT++D V+ N G PLTYQ FL V+ I +
Sbjct: 121 IRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGL 170
>AB019389-1|BAA35000.1| 542|Drosophila melanogaster blue light
photoreceptor protein.
Length = 542
Score = 90.2 bits (214), Expect = 3e-18
Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 5/170 (2%)
Frame = +3
Query: 147 SKTATVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFL 320
++ A VI WFR LR+HDN AL A+ + + L+ P++ D VG NR+RFL
Sbjct: 3 TRGANVI-WFRHGLRLHDNPALLAALADKDQGIALI-PVFIFDGESAGTKNVGYNRMRFL 60
Query: 321 LQSLEDLDSNLKKLNT---CLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEY 491
L SL+D+D L+ L V G+ + +L + ++ + + D +P + ++DE
Sbjct: 61 LDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDES 120
Query: 492 IEDIAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINV 641
I + + + ++V HT++D V+ N G PLTYQ FL V+ I +
Sbjct: 121 IRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGL 170
>AB018400-1|BAA33787.1| 542|Drosophila melanogaster blue-light
receptor protein.
Length = 542
Score = 90.2 bits (214), Expect = 3e-18
Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 5/170 (2%)
Frame = +3
Query: 147 SKTATVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFL 320
++ A VI WFR LR+HDN AL A+ + + L+ P++ D VG NR+RFL
Sbjct: 3 TRGANVI-WFRHGLRLHDNPALLAALADKDQGIALI-PVFIFDGESAGTKNVGYNRMRFL 60
Query: 321 LQSLEDLDSNLKKLNT---CLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEY 491
L SL+D+D L+ L V G+ + +L + ++ + + D +P + ++DE
Sbjct: 61 LDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDES 120
Query: 492 IEDIAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINV 641
I + + + ++V HT++D V+ N G PLTYQ FL V+ I +
Sbjct: 121 IRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGL 170
>S73530-1|AAB32328.1| 536|Drosophila melanogaster phr protein.
Length = 536
Score = 46.4 bits (105), Expect = 5e-05
Identities = 36/144 (25%), Positives = 66/144 (45%)
Frame = +3
Query: 141 KMSKTATVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFL 320
K S V++W D R+ DN AL A A + L ++ L P + I +F+
Sbjct: 90 KESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT-IRHYKFM 148
Query: 321 LQSLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIED 500
+ L++++ + L+ ++L G AV+ LP+ + + C D P + + +++ED
Sbjct: 149 MGGLQEVEQQCRALDIPFHLLMGSAVEKLPQFVKSKDIGAVVC--DFAPLRLPR-QWVED 205
Query: 501 IAEKKGVFINKRVQHTVYDVHKVL 572
+ G + K V D H V+
Sbjct: 206 V----GKALPKSVPLVQVDAHNVV 225
>D26021-1|BAA05042.1| 640|Drosophila melanogaster photolyase
protein.
Length = 640
Score = 46.4 bits (105), Expect = 5e-05
Identities = 36/144 (25%), Positives = 66/144 (45%)
Frame = +3
Query: 141 KMSKTATVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFL 320
K S V++W D R+ DN AL A A + L ++ L P + I +F+
Sbjct: 195 KESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT-IRHYKFM 253
Query: 321 LQSLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIED 500
+ L++++ + L+ ++L G AV+ LP+ + + C D P + + +++ED
Sbjct: 254 MGGLQEVEQQCRALDIPFHLLMGSAVEKLPQFVKSKDIGAVVC--DFAPLRLPR-QWVED 310
Query: 501 IAEKKGVFINKRVQHTVYDVHKVL 572
+ G + K V D H V+
Sbjct: 311 V----GKALPKSVPLVQVDAHNVV 330
>AY084133-1|AAL89871.1| 555|Drosophila melanogaster RE21178p
protein.
Length = 555
Score = 46.4 bits (105), Expect = 5e-05
Identities = 36/144 (25%), Positives = 66/144 (45%)
Frame = +3
Query: 141 KMSKTATVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFL 320
K S V++W D R+ DN AL A A + L ++ L P + I +F+
Sbjct: 110 KESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT-IRHYKFM 168
Query: 321 LQSLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIED 500
+ L++++ + L+ ++L G AV+ LP+ + + C D P + + +++ED
Sbjct: 169 MGGLQEVEQQCRALDIPFHLLMGSAVEKLPQFVKSKDIGAVVC--DFAPLRLPR-QWVED 225
Query: 501 IAEKKGVFINKRVQHTVYDVHKVL 572
+ G + K V D H V+
Sbjct: 226 V----GKALPKSVPLVQVDAHNVV 245
>AE013599-515|AAM68868.1| 535|Drosophila melanogaster CG11205-PB,
isoform B protein.
Length = 535
Score = 46.4 bits (105), Expect = 5e-05
Identities = 36/144 (25%), Positives = 66/144 (45%)
Frame = +3
Query: 141 KMSKTATVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFL 320
K S V++W D R+ DN AL A A + L ++ L P + I +F+
Sbjct: 90 KESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT-IRHYKFM 148
Query: 321 LQSLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIED 500
+ L++++ + L+ ++L G AV+ LP+ + + C D P + + +++ED
Sbjct: 149 MGGLQEVEQQCRALDIPFHLLMGSAVEKLPQFVKSKDIGAVVC--DFAPLRLPR-QWVED 205
Query: 501 IAEKKGVFINKRVQHTVYDVHKVL 572
+ G + K V D H V+
Sbjct: 206 V----GKALPKSVPLVQVDAHNVV 225
>AE013599-514|AAF59185.1| 555|Drosophila melanogaster CG11205-PA,
isoform A protein.
Length = 555
Score = 46.4 bits (105), Expect = 5e-05
Identities = 36/144 (25%), Positives = 66/144 (45%)
Frame = +3
Query: 141 KMSKTATVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFL 320
K S V++W D R+ DN AL A A + L ++ L P + I +F+
Sbjct: 110 KESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT-IRHYKFM 168
Query: 321 LQSLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIED 500
+ L++++ + L+ ++L G AV+ LP+ + + C D P + + +++ED
Sbjct: 169 MGGLQEVEQQCRALDIPFHLLMGSAVEKLPQFVKSKDIGAVVC--DFAPLRLPR-QWVED 225
Query: 501 IAEKKGVFINKRVQHTVYDVHKVL 572
+ G + K V D H V+
Sbjct: 226 V----GKALPKSVPLVQVDAHNVV 245
>AY069793-1|AAL39938.1| 894|Drosophila melanogaster SD03467p
protein.
Length = 894
Score = 29.5 bits (63), Expect = 6.4
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 20/139 (14%)
Frame = +3
Query: 279 NIKDKV-------GINRLRFLLQSLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVK 437
NI+DK+ G L L S+E+ S +K+ T + V + KA LF + K
Sbjct: 216 NIRDKLQEDVKLHGNETLNILETSIENSISESQKIFTDVLVRKEKADSTRSVLFALSRHK 275
Query: 438 YLTC---QVDIDPEFVQQDEYIEDIAEKKGVF----------INKRVQHTVYDVHKVLRE 578
+L C VD + + D + D + K +F + + V H + + K L E
Sbjct: 276 FLFCLPNSVDRRAKAGEYDIVVNDYSRAKNLFGKTEIPIFRKVLEEVDHRILSIRKQLHE 335
Query: 579 NNGAVPLTYQKFLSLVKSI 635
+P + ++ L+K++
Sbjct: 336 KVVKMPQSVEQQKKLIKAL 354
>AE014134-605|AAF51106.1| 894|Drosophila melanogaster CG8843-PA
protein.
Length = 894
Score = 29.5 bits (63), Expect = 6.4
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 20/139 (14%)
Frame = +3
Query: 279 NIKDKV-------GINRLRFLLQSLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVK 437
NI+DK+ G L L S+E+ S +K+ T + V + KA LF + K
Sbjct: 216 NIRDKLQEDVKLHGNETLNILETSIENSISESQKIFTDVLVRKEKADSTRSVLFALSRHK 275
Query: 438 YLTC---QVDIDPEFVQQDEYIEDIAEKKGVF----------INKRVQHTVYDVHKVLRE 578
+L C VD + + D + D + K +F + + V H + + K L E
Sbjct: 276 FLFCLPNSVDRRAKAGEYDIVVNDYSRAKNLFGKTEIPIFRKVLEEVDHRILSIRKQLHE 335
Query: 579 NNGAVPLTYQKFLSLVKSI 635
+P + ++ L+K++
Sbjct: 336 KVVKMPQSVEQQKKLIKAL 354
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,769,692
Number of Sequences: 53049
Number of extensions: 586301
Number of successful extensions: 1424
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4250176164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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