Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K06
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.    130   2e-32
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   8.5  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score =  130 bits (314), Expect = 2e-32
 Identities = 65/164 (39%), Positives = 100/164 (60%), Gaps = 2/164 (1%)
 Frame = +3

Query: 165 IHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLED 338
           +HWFR  LR+HDN +LR  +  A       R ++ LDP       +GIN+ RFLLQ LED
Sbjct: 24  VHWFRKGLRLHDNPSLREGLAGAST----FRCVFVLDPWFAGSTNIGINKWRFLLQCLED 79

Query: 339 LDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKG 518
           LD +L+KLN+ L+V+RG+  D LPKLF +W    LT + D +P    +D  I  + ++ G
Sbjct: 80  LDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCKELG 139

Query: 519 VFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINVKEP 650
           + + ++V HT+Y + +++  N    PLTY +F ++V S++  EP
Sbjct: 140 ISVVQKVSHTLYKLDEIIERNGDKPPLTYHQFQTVVASMDPPEP 183


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 573 RENNGAVPLTYQKFLSLVKSIN--VKEPIEISNVLSSH 680
           RE    VPL  QK++ ++  ++  +   I++  V+ S+
Sbjct: 309 RETGATVPLHMQKYVQMIHDLHTRISTAIDLGYVVDSY 346


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 573 RENNGAVPLTYQKFLSLVKSIN--VKEPIEISNVLSSH 680
           RE    VPL  QK++ ++  ++  +   I++  V+ S+
Sbjct: 309 RETGATVPLHMQKYVQMIHDLHTRISTAIDLGYVVDSY 346


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 408 PKLFDDWQVKYLTCQVDIDPEF 473
           P + DD + ++ TC +D+ P +
Sbjct: 171 PVVLDDSKEEHPTCALDLTPTY 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,080
Number of Sequences: 438
Number of extensions: 4442
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)