Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_K06
(877 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g15620.1 68416.m01981 6-4 photolyase (UVR3) identical to 6-4 ... 113 1e-25
At2g47590.1 68415.m05938 photolyase/blue light photoreceptor (PH... 58 6e-09
At5g24850.1 68418.m02938 cryptochrome dash (CRYD) nearly identic... 53 3e-07
At4g25290.1 68417.m03637 deoxyribodipyrimidine photolyase family... 44 1e-04
At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) / flav... 39 0.004
At1g04400.2 68414.m00431 cryptochrome 2 apoprotein (CRY2) / blue... 35 0.062
At1g04400.1 68414.m00430 cryptochrome 2 apoprotein (CRY2) / blue... 35 0.062
At3g60440.1 68416.m06760 expressed protein 33 0.25
At5g58320.2 68418.m07301 kinase interacting protein-related low ... 32 0.58
At5g58320.1 68418.m07300 kinase interacting protein-related low ... 32 0.58
At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast... 30 2.3
At5g35460.1 68418.m04217 expressed protein 29 5.4
At1g62740.1 68414.m07081 stress-inducible protein, putative simi... 29 5.4
>At3g15620.1 68416.m01981 6-4 photolyase (UVR3) identical to 6-4
photolyase (UVR3) GB:AB003687 [Arabidopsis thaliana]
(Nucleic Acids Res. 26 (2), 638-644 (1998))
Length = 556
Score = 113 bits (272), Expect = 1e-25
Identities = 59/162 (36%), Positives = 94/162 (58%), Gaps = 11/162 (6%)
Frame = +3
Query: 171 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKD-----------KVGINRLRF 317
WFR LR+HDN AL A +E + P++ +DP+ + + G+NR+RF
Sbjct: 29 WFRKGLRVHDNPALEYASKGSE----FMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRF 84
Query: 318 LLQSLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIE 497
LL+SL+DLDS+LKKL + L V +G+ ++L + +W+VK L + D DP + D ++
Sbjct: 85 LLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVK 144
Query: 498 DIAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSL 623
D A GV + V HT+++ ++ +N G PL+YQ FL +
Sbjct: 145 DYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKV 186
>At2g47590.1 68415.m05938 photolyase/blue light photoreceptor (PHR2)
identical to photolyase/blue light photoreceptor PHR2
[Arabidopsis thaliana] GI:3319288; contains Pfam domain,
PF00875: deoxyribodipyrimidine photolyase
Length = 447
Score = 58.4 bits (135), Expect = 6e-09
Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 7/195 (3%)
Frame = +3
Query: 150 KTATVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIK-------DKVGINR 308
+ A V+ WFR DLR+HDN L +A +E + + P+Y DP DK G R
Sbjct: 114 RRAAVV-WFRNDLRVHDNECLNSANDECVS----VLPVYCFDPRDYGKSSSGFDKTGPFR 168
Query: 309 LRFLLQSLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDE 488
+FL++S+ +L NL+ + L V GK +L +L + + ++ + V+ +
Sbjct: 169 AQFLIESVSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEG 228
Query: 489 YIEDIAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINVKEPIEISNV 668
IE +++GV + T+Y + L +P Y F V+ + +++ I +
Sbjct: 229 KIETAMKEEGVEVKYFWGSTLYHLDD-LPFKIEDLPSNYGAFKDKVQKLEIRKTIAALDQ 287
Query: 669 LSSHCKPIDIQSGKL 713
L S D++ G +
Sbjct: 288 LKSLPSRGDVELGDI 302
>At5g24850.1 68418.m02938 cryptochrome dash (CRYD) nearly identical
to cryptochrome dash [Arabidopsis thaliana] GI:28971609;
similar to Deoxyribodipyrimidine photolyase (DNA
photolyase) (Photoreactivating
enzyme)(SP:Q55081){Synechocystis sp.}
Length = 526
Score = 52.8 bits (121), Expect = 3e-07
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Frame = +3
Query: 141 KMSKTATVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKD--------KV 296
+ K T++ WFR DLR+ DN AL A + ++ + P+Y LDP + K
Sbjct: 37 RKGKGVTIL-WFRNDLRVLDNDALYKAWSSSDT----ILPVYCLDPRLFHTTHFFNFPKT 91
Query: 297 GINRLRFLLQSLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYL-----TCQVDI 461
G R FL++ L DL NL K L + GK ++LP L D+ + + TC ++
Sbjct: 92 GALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEV 151
Query: 462 DPE 470
D E
Sbjct: 152 DVE 154
>At4g25290.1 68417.m03637 deoxyribodipyrimidine photolyase family
protein / DNA photolyase family protein contains Pfam
domain, PF00875: deoxyribodipyrimidine photolyase
Length = 581
Score = 44.4 bits (100), Expect = 1e-04
Identities = 26/103 (25%), Positives = 52/103 (50%)
Frame = +3
Query: 156 ATVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFLLQSLE 335
+T + WF+ DLR+ D+ L A ++ + P+Y LD I + + L + +LE
Sbjct: 35 STAVVWFKHDLRVDDHPGLL-----AASKHRAVIPLYVLDRRILSRYTTDTLELAIIALE 89
Query: 336 DLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDID 464
DL LKK + L + G A +++ L + + ++ + +++
Sbjct: 90 DLRKTLKKQGSNLMLRYGNAENVIEDLVKEVRAPFVFVEEEVE 132
>At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) /
flavin-type blue-light photoreceptor (HY4) contains Pfam
PF03441: FAD binding domain of DNA photolyase; member of
Pfam PF00875: deoxyribodipyrimidine photolyase
superfamily; 99% identical to Cryptochrome 1 apoprotein
(Blue light photoreceptor) (flavin-type blue-light
photoreceptor) (SP:Q43125) [Arabidopsis thaliana]
Length = 681
Score = 39.1 bits (87), Expect = 0.004
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 3/141 (2%)
Frame = +3
Query: 165 IHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLR--FLLQSLED 338
I WFR DLR+ DN AL A+ R + ++ P + R+ +L SL
Sbjct: 15 IVWFRRDLRVEDNPALAAAV-----RAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQ 69
Query: 339 LDSNLKKLNTCLYVLRG-KAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKK 515
LDS+L+ L TCL R +V L + + DP + +D +D+ +
Sbjct: 70 LDSSLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129
Query: 516 GVFINKRVQHTVYDVHKVLRE 578
G+ + +Y+ +V E
Sbjct: 130 GIAVRSFNADLLYEPWEVTDE 150
>At1g04400.2 68414.m00431 cryptochrome 2 apoprotein (CRY2) / blue
light photoreceptor (PHH1) 97% identical to photolysase
(PHH1) (SP:Q96524) and cryptochrome 2 apoprotein (CRY2)
(SP:U43397). ESTs gb|W43661 and gb|Z25638 come from this
gene; contains Pfam profiles PF03441: FAD binding domain
of DNA photolyase and PF00875: deoxyribodipyrimidine
photolyase; identical to cDNA Cvi cryptochrome 2 (CRY2)
GI:18026275
Length = 612
Score = 35.1 bits (77), Expect = 0.062
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 5/151 (3%)
Frame = +3
Query: 141 KMSKTATVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLR-- 314
KM K V WFR DLRI DN AL A +E + P++ P + + R
Sbjct: 2 KMDKKTIV--WFRRDLRIEDNPALAAAAHEGS-----VFPVFIWCPEEEGQFYPGRASRW 54
Query: 315 FLLQSLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVD---IDPEFVQQD 485
++ QSL L +LK L + L ++ K + + + D +V T V DP + +D
Sbjct: 55 WMKQSLAHLSQSLKALGSDLTLI--KTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRD 112
Query: 486 EYIEDIAEKKGVFINKRVQHTVYDVHKVLRE 578
+++ ++G+ + +Y+ ++ E
Sbjct: 113 HTVKEKLVERGISVQSYNGDLLYEPWEIYCE 143
>At1g04400.1 68414.m00430 cryptochrome 2 apoprotein (CRY2) / blue
light photoreceptor (PHH1) 97% identical to photolysase
(PHH1) (SP:Q96524) and cryptochrome 2 apoprotein (CRY2)
(SP:U43397). ESTs gb|W43661 and gb|Z25638 come from this
gene; contains Pfam profiles PF03441: FAD binding domain
of DNA photolyase and PF00875: deoxyribodipyrimidine
photolyase; identical to cDNA Cvi cryptochrome 2 (CRY2)
GI:18026275
Length = 612
Score = 35.1 bits (77), Expect = 0.062
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 5/151 (3%)
Frame = +3
Query: 141 KMSKTATVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLR-- 314
KM K V WFR DLRI DN AL A +E + P++ P + + R
Sbjct: 2 KMDKKTIV--WFRRDLRIEDNPALAAAAHEGS-----VFPVFIWCPEEEGQFYPGRASRW 54
Query: 315 FLLQSLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVD---IDPEFVQQD 485
++ QSL L +LK L + L ++ K + + + D +V T V DP + +D
Sbjct: 55 WMKQSLAHLSQSLKALGSDLTLI--KTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRD 112
Query: 486 EYIEDIAEKKGVFINKRVQHTVYDVHKVLRE 578
+++ ++G+ + +Y+ ++ E
Sbjct: 113 HTVKEKLVERGISVQSYNGDLLYEPWEIYCE 143
>At3g60440.1 68416.m06760 expressed protein
Length = 268
Score = 33.1 bits (72), Expect = 0.25
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 453 VDIDPEFVQQDEYIED-IAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVK 629
+ I PE +D + I+E + +F + V H+V V+K + + V +FLSL+K
Sbjct: 126 IAIKPEIAPKDGKFDFMISELEAIFPDGMVDHSVDPVYKEMPQWEETVEGCTDRFLSLIK 185
Query: 630 SINVKEPIE 656
++ K P E
Sbjct: 186 TLADKYPSE 194
>At5g58320.2 68418.m07301 kinase interacting protein-related low
similarity to kinase interacting protein 1 [Petunia
integrifolia] GI:13936326
Length = 558
Score = 31.9 bits (69), Expect = 0.58
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Frame = +3
Query: 324 QSLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDI 503
Q L+D++ L+ +Y+L+ + LP DD Q + ++D E + ++ I +
Sbjct: 251 QELKDVNEKLQNSEDQIYILKSQLARYLPSGLDDEQSEGAASTQELDIETLSEELRITSL 310
Query: 504 ----AEKKGVFINKRVQHTVYDVHKV 569
AEK+ + K V+ + D K+
Sbjct: 311 RLREAEKQNGIMRKEVEKSKSDDAKL 336
>At5g58320.1 68418.m07300 kinase interacting protein-related low
similarity to kinase interacting protein 1 [Petunia
integrifolia] GI:13936326
Length = 490
Score = 31.9 bits (69), Expect = 0.58
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Frame = +3
Query: 324 QSLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDI 503
Q L+D++ L+ +Y+L+ + LP DD Q + ++D E + ++ I +
Sbjct: 251 QELKDVNEKLQNSEDQIYILKSQLARYLPSGLDDEQSEGAASTQELDIETLSEELRITSL 310
Query: 504 ----AEKKGVFINKRVQHTVYDVHKV 569
AEK+ + K V+ + D K+
Sbjct: 311 RLREAEKQNGIMRKEVEKSKSDDAKL 336
>At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast
(ATPC2) identical to SP|Q01909 ATP synthase gamma chain
2, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase;
similar to ATP synthase gamma-subunit GI:21241 from
[Spinacia oleracea]
Length = 386
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +3
Query: 471 FVQQDEY-IEDIAEKKGVF-INKRVQHTVYDVHKV-LRENNGAVPLTYQKFLSLVKS 632
F ++DE+ ++ E GVF K Q DV + + E V L Y KF+SLVKS
Sbjct: 187 FSRRDEFDVDKCIEGGGVFPTTKEAQVIADDVFSLFVSEEVDKVELVYTKFVSLVKS 243
>At5g35460.1 68418.m04217 expressed protein
Length = 381
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Frame = -1
Query: 802 FKSFCFT----NHDISQVLMFLHQFVIPLNWVYY 713
F FCF DI V F + +PL W+YY
Sbjct: 77 FGGFCFLLGARPQDIPLVYCFFYVIFVPLRWIYY 110
>At1g62740.1 68414.m07081 stress-inducible protein, putative similar
to sti (stress inducible protein) [Glycine max]
GI:872116; contains Pfam profile PF00515 TPR Domain
Length = 571
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 141 KMSKT-ATVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDK 293
K+SK VI ++ L H N +NEAE K L + DPNI D+
Sbjct: 333 KVSKDYEPVIQTYQKALTEHRNPETLKRLNEAERAKKELEQQEYYDPNIGDE 384
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,224,703
Number of Sequences: 28952
Number of extensions: 294080
Number of successful extensions: 716
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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