Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_K05
(908 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 66 4e-11
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 66 4e-11
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 65 5e-11
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 64 1e-10
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 59 5e-09
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 59 5e-09
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 59 5e-09
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 58 8e-09
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 58 8e-09
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 57 1e-08
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 54 1e-07
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 52 5e-07
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 52 5e-07
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 49 4e-06
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 49 4e-06
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 49 4e-06
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 49 5e-06
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 48 7e-06
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 47 2e-05
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 47 2e-05
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 47 2e-05
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 46 3e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 46 3e-05
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 46 5e-05
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 44 1e-04
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 44 1e-04
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 44 2e-04
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 43 2e-04
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 43 2e-04
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 43 2e-04
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 43 2e-04
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 43 2e-04
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 43 2e-04
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 43 3e-04
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 43 3e-04
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 43 3e-04
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 43 3e-04
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 42 4e-04
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 42 6e-04
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 42 6e-04
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 42 6e-04
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 42 6e-04
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 42 6e-04
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 42 7e-04
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 42 7e-04
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 42 7e-04
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 42 7e-04
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 41 0.001
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 41 0.001
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 41 0.001
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 41 0.001
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 41 0.001
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 41 0.001
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 41 0.001
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 41 0.001
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 41 0.001
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 41 0.001
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 41 0.001
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 40 0.002
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 40 0.002
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 40 0.002
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 40 0.002
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 40 0.002
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 40 0.002
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 40 0.002
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 40 0.003
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 40 0.003
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 39 0.005
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 39 0.005
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 39 0.005
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 38 0.007
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 38 0.009
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 38 0.012
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 38 0.012
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 38 0.012
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 38 0.012
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 38 0.012
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 38 0.012
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 37 0.016
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 37 0.016
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 37 0.016
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 37 0.016
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 37 0.016
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 37 0.016
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 37 0.016
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 37 0.016
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 37 0.021
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 37 0.021
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 37 0.021
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 36 0.028
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 36 0.028
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 36 0.037
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 36 0.037
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 36 0.037
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 36 0.037
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 36 0.037
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 36 0.037
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 36 0.049
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 36 0.049
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 36 0.049
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 36 0.049
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 36 0.049
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 35 0.065
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 35 0.065
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 35 0.086
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 35 0.086
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 35 0.086
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 35 0.086
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 35 0.086
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 35 0.086
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 34 0.11
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 34 0.15
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 34 0.15
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 34 0.15
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 33 0.20
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 33 0.26
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 33 0.26
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 33 0.26
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 33 0.26
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 33 0.26
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 33 0.26
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 33 0.26
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 33 0.35
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 33 0.35
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 33 0.35
At2g47310.1 68415.m05906 flowering time control protein-related ... 33 0.35
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 32 0.46
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 32 0.46
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 32 0.46
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 32 0.46
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 32 0.46
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 32 0.46
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 32 0.60
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 32 0.60
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 32 0.60
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 32 0.60
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 31 0.80
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 31 0.80
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 31 1.1
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 31 1.1
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 31 1.4
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 31 1.4
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu... 31 1.4
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu... 31 1.4
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 31 1.4
At5g21030.1 68418.m02501 PAZ domain-containing protein / piwi do... 30 1.8
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 30 1.8
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 30 1.8
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 30 1.8
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 30 1.8
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 30 1.8
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 30 2.4
At3g61130.1 68416.m06841 glycosyl transferase family 8 protein c... 30 2.4
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 30 2.4
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 30 2.4
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 30 2.4
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 29 3.2
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 29 3.2
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 29 3.2
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 29 4.3
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 29 4.3
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 29 4.3
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 29 4.3
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 29 5.6
At5g03480.1 68418.m00304 expressed protein ; expression support... 29 5.6
At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing ... 29 5.6
At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing ... 29 5.6
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 29 5.6
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 29 5.6
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 28 7.4
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 28 7.4
At2g33440.1 68415.m04099 splicing factor family protein similar ... 28 7.4
At1g79880.3 68414.m09332 La domain-containing protein contains P... 28 7.4
At1g79880.2 68414.m09331 La domain-containing protein contains P... 28 7.4
At1g79880.1 68414.m09333 La domain-containing protein contains P... 28 7.4
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 28 7.4
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil... 28 7.4
At1g05510.1 68414.m00563 expressed protein 28 7.4
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 28 9.8
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 28 9.8
At1g67550.1 68414.m07696 urease, putative / urea amidohydrolase,... 28 9.8
At1g35420.1 68414.m04394 dienelactone hydrolase family protein l... 28 9.8
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 65.7 bits (153), Expect = 4e-11
Identities = 29/58 (50%), Positives = 42/58 (72%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 381
TRVYVG L + + +LE EF +G L +VWVA PPG+AF+EF++ ++A DA SA++
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 65.7 bits (153), Expect = 4e-11
Identities = 29/58 (50%), Positives = 42/58 (72%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 381
TRVYVG L + + +LE EF +G L +VWVA PPG+AF+EF++ ++A DA SA++
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 65.3 bits (152), Expect = 5e-11
Identities = 28/59 (47%), Positives = 42/59 (71%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 384
+RVYVG L + + +LE EF +G + SVWVA PPG+AF++FE+ ++A DA A++G
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 64.1 bits (149), Expect = 1e-10
Identities = 27/59 (45%), Positives = 41/59 (69%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 384
+RVYVG L + + +LE EF +G + SVWVA PPG+AF++FE+ ++A DA ++G
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 58.8 bits (136), Expect = 5e-09
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +1
Query: 193 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 363
MSS +R VYVG L I++ ++E F KYG + + + + PPG+AF+EF++ ++AED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 364 ACSAMNGTEMLGATLKVEIS 423
A +G + G L+VE++
Sbjct: 61 AIHGRDGYDFDGHRLRVELA 80
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 58.8 bits (136), Expect = 5e-09
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +1
Query: 193 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 363
MSS +R VYVG L I++ ++E F KYG + + + + PPG+AF+EF++ ++AED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 364 ACSAMNGTEMLGATLKVEIS 423
A +G + G L+VE++
Sbjct: 61 AIHGRDGYDFDGHRLRVELA 80
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 58.8 bits (136), Expect = 5e-09
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +1
Query: 193 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 363
MSS +R VYVG L I++ ++E F KYG + + + + PPG+AF+EF++ ++AED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 364 ACSAMNGTEMLGATLKVEIS 423
A +G + G L+VE++
Sbjct: 61 AIHGRDGYDFDGHRLRVELA 80
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 58.0 bits (134), Expect = 8e-09
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +1
Query: 193 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 363
MSS +R +YVG L I++ ++E F KYG + + + + PPG+AF+EFE+ ++A+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 364 ACSAMNGTEMLGATLKVEIS 423
A +G + G L+VE++
Sbjct: 61 AIYGRDGYDFDGHHLRVELA 80
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 58.0 bits (134), Expect = 8e-09
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +1
Query: 193 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 363
MSS +R +YVG L I++ ++E F KYG + + + + PPG+AF+EFE+ ++A+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 364 ACSAMNGTEMLGATLKVEIS 423
A +G + G L+VE++
Sbjct: 61 AIYGRDGYDFDGHHLRVELA 80
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 57.2 bits (132), Expect = 1e-08
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Frame = +1
Query: 193 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 363
MSS R +YVG L I+K ++E F KYG + + + + PPG+AF+EFE+ ++A+D
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 364 ACSAMNGTEMLGATLKVEIS 423
A +G + G L+VEI+
Sbjct: 61 AIYGRDGYDFDGCRLRVEIA 80
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 54.0 bits (124), Expect = 1e-07
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDACSAMNGT 387
+YVG L I++ ++E F KYG++ + + + PP + F+EFE+ ++AEDA +G
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGY 68
Query: 388 EMLGATLKVEIS 423
+ G L+VE++
Sbjct: 69 NLDGCRLRVELA 80
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 52.0 bits (119), Expect = 5e-07
Identities = 27/74 (36%), Positives = 45/74 (60%)
Frame = +1
Query: 202 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 381
G TR+YVG L + DLER F +YG++ V + + +AF+EF + ++A+DA ++
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFSDPRDADDARYYLD 65
Query: 382 GTEMLGATLKVEIS 423
G + G+ + VE S
Sbjct: 66 GRDFDGSRITVEAS 79
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 52.0 bits (119), Expect = 5e-07
Identities = 27/74 (36%), Positives = 45/74 (60%)
Frame = +1
Query: 202 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 381
G TR+YVG L + DLER F +YG++ V + + +AF+EF + ++A+DA ++
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFGDPRDADDARHYLD 65
Query: 382 GTEMLGATLKVEIS 423
G + G+ + VE S
Sbjct: 66 GRDFDGSRITVEFS 79
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 49.2 bits (112), Expect = 4e-06
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACS 372
+R++VGGL + + LE FD+YGK+ + + P GF FI F + + A+DA
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 373 AMNGTEMLGATLKV 414
M+G E+ + V
Sbjct: 72 HMHGRELGNKVISV 85
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 49.2 bits (112), Expect = 4e-06
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACS 372
+R++VGGL + + LE FD+YGK+ + + P GF FI F + + A+DA
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 373 AMNGTEMLGATLKV 414
M+G E+ + V
Sbjct: 72 HMHGRELGNKVISV 85
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 49.2 bits (112), Expect = 4e-06
Identities = 23/69 (33%), Positives = 43/69 (62%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 387
T ++VGGL + EDL++ F+++G++ SV + + G F++F N AE+A +NGT
Sbjct: 304 TTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVG-KGCGFVQFVNRPNAEEALEKLNGT 362
Query: 388 EMLGATLKV 414
+ T+++
Sbjct: 363 VIGKQTVRL 371
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 48.8 bits (111), Expect = 5e-06
Identities = 23/69 (33%), Positives = 42/69 (60%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 387
T ++VGGL + EDL++ F ++G++ SV + + G F++F N AE+A +NGT
Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVG-KGCGFVQFVNRPNAEEALEKLNGT 364
Query: 388 EMLGATLKV 414
+ T+++
Sbjct: 365 VIGKQTVRL 373
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 48.4 bits (110), Expect = 7e-06
Identities = 23/63 (36%), Positives = 38/63 (60%)
Frame = +1
Query: 199 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 378
S + ++VGGL + +EDL + F +G++ SV + + G F++F N Q AE+A +
Sbjct: 324 SNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG-KGCGFVQFANRQSAEEAIGNL 382
Query: 379 NGT 387
NGT
Sbjct: 383 NGT 385
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 47.2 bits (107), Expect = 2e-05
Identities = 22/51 (43%), Positives = 31/51 (60%)
Frame = +1
Query: 247 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 399
KED++ E K+GKLN ++V N GF ++ FEN Q A A A++G G
Sbjct: 488 KEDVKEECSKFGKLNHIFVDKNSVGFVYLRFENAQAAIGAQRALHGRWFAG 538
Score = 46.4 bits (105), Expect = 3e-05
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Frame = +1
Query: 196 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAED 363
S G R+YVG L + ++DL + F+ +G + V V + GF F++F L++A +
Sbjct: 281 SGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARN 340
Query: 364 ACSAMNGTEMLGATLKV 414
A + E+ G +KV
Sbjct: 341 ALNLNGQLEIAGRAIKV 357
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Frame = +1
Query: 205 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 369
G + V G+ E ++ED+ F +G++ ++ + L+ G+A IE+E +EA+ A
Sbjct: 94 GWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAI 153
Query: 370 SAMNGTEMLGATLKVE 417
SAMNG E+L + V+
Sbjct: 154 SAMNGAELLTQNVSVD 169
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +1
Query: 199 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDA 366
S G +Y+ L + + E L+ F +YG + S V LNP GF F+ + N +EA A
Sbjct: 329 SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRA 388
Query: 367 CSAMNGTEMLG 399
S MNG +M+G
Sbjct: 389 LSEMNG-KMIG 398
Score = 39.1 bits (87), Expect = 0.004
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 375
T VYV L + I +++L + F K+G ++S V + G F F+ FE + A A
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Query: 376 MNGTEM 393
MNG +
Sbjct: 289 MNGISL 294
Score = 33.5 bits (73), Expect = 0.20
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +1
Query: 190 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEA 357
T SG +++ L I + L F +G + S VA++ G+ F++FE + A
Sbjct: 130 TRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESA 189
Query: 358 EDACSAMNGTEM 393
+ A +NG M
Sbjct: 190 QAAIDKLNGMLM 201
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 46.4 bits (105), Expect = 3e-05
Identities = 25/68 (36%), Positives = 41/68 (60%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 393
++VGG+ + K+DLE EF K+GK+ + L AFI++ + +A A +MNG M
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKIED-FRFLRERKTAFIDYYEMDDALQA-KSMNGKPM 309
Query: 394 LGATLKVE 417
G+ L+V+
Sbjct: 310 GGSFLRVD 317
Score = 38.3 bits (85), Expect = 0.007
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 393
++VG L + DL F +YG ++ + V + GFAFI + +++EA A A+ G +
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITV-YSSRGFAFIYYRHVEEAVAAKEALQGANL 78
Query: 394 LG 399
G
Sbjct: 79 NG 80
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 46.0 bits (104), Expect = 3e-05
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 375
T VYV L E +DL+ F +YGK+ S V + GF F+ FEN +A A +
Sbjct: 29 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 88
Query: 376 MNG 384
+NG
Sbjct: 89 LNG 91
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 45.6 bits (103), Expect = 5e-05
Identities = 21/63 (33%), Positives = 38/63 (60%)
Frame = +1
Query: 199 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 378
S ++VGG+ + EDL + F ++G++ SV + + G F++F + + AEDA ++
Sbjct: 318 STNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK-GCGFVQFADRKSAEDAIESL 376
Query: 379 NGT 387
NGT
Sbjct: 377 NGT 379
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 44.4 bits (100), Expect = 1e-04
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +1
Query: 211 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSA 375
R ++GGL L F+KYG L V L+ GF FI F+ + ++A +A
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 376 MNGTEMLGATLKVE 417
MNG ++ G T+ V+
Sbjct: 68 MNGMDLDGRTITVD 81
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/73 (34%), Positives = 38/73 (52%)
Frame = +1
Query: 205 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 384
GT V V L + DLE F YG++ + N F+EF +++ A+ A A+N
Sbjct: 222 GTLV-VFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKALNR 280
Query: 385 TEMLGATLKVEIS 423
TE+ G +K+E S
Sbjct: 281 TEIAGKRIKLEHS 293
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/51 (43%), Positives = 34/51 (66%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 366
V+VG ++ DLER FDKYG+++ V + G+AF+ FE+ ++AEDA
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDM---KSGYAFVYFEDERDAEDA 51
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/58 (32%), Positives = 35/58 (60%)
Frame = +1
Query: 244 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 417
K+ D+E+ F+ YGK+ +V + N F+F++FE ++A A A +++L + VE
Sbjct: 106 KEHDIEKHFEPYGKVTNVRIRRN---FSFVQFETQEDATKALEATQRSKILDRVVSVE 160
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +1
Query: 235 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 414
+ + DLER F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 106 QNTRTRDLERHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDATNSSKLMDKVISV 162
Query: 415 E 417
E
Sbjct: 163 E 163
Score = 42.3 bits (95), Expect = 4e-04
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE- 390
V+ G ++ DLER F KYGK+ V + GFAF+ E+ ++AEDA A++ E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDM---KAGFAFVYMEDERDAEDAIRALDRFEY 60
Query: 391 -MLGATLKVE 417
G L+VE
Sbjct: 61 GRTGRRLRVE 70
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +1
Query: 235 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 414
+ + DLER F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 106 QNTRTRDLERHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDATNSSKLMDKVISV 162
Query: 415 E 417
E
Sbjct: 163 E 163
Score = 42.3 bits (95), Expect = 4e-04
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE- 390
V+ G ++ DLER F KYGK+ V + GFAF+ E+ ++AEDA A++ E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDM---KAGFAFVYMEDERDAEDAIRALDRFEY 60
Query: 391 -MLGATLKVE 417
G L+VE
Sbjct: 61 GRTGRRLRVE 70
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Frame = +1
Query: 205 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 369
GT +YV GL + +DLE F K GK+ S ++ + P GFAF+ +L++AE
Sbjct: 71 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 130
Query: 370 SAMNGTEMLG 399
+N + + G
Sbjct: 131 KYLNQSVLEG 140
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Frame = +1
Query: 205 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 369
GT +YV GL + +DLE F K GK+ S ++ + P GFAF+ +L++AE
Sbjct: 70 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 129
Query: 370 SAMNGTEMLG 399
+N + + G
Sbjct: 130 KYLNQSVLEG 139
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +1
Query: 196 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 360
S G R+YVG L G+ LE F++ GK+ V + GF F+ + QE +
Sbjct: 245 SGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 304
Query: 361 DACSAMNGTEMLGATLKV 414
A +++NG ++ G ++V
Sbjct: 305 KAINSLNGADLDGRQIRV 322
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Frame = +1
Query: 211 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 375
+++VG L + L + F+ G + V V + GF F+ E E A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 376 MNGTEMLGATLKV 414
NG E G L+V
Sbjct: 160 FNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +1
Query: 196 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 360
S G R+YVG L G+ LE F++ GK+ V + GF F+ + QE +
Sbjct: 253 SGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 312
Query: 361 DACSAMNGTEMLGATLKV 414
A +++NG ++ G ++V
Sbjct: 313 KAINSLNGADLDGRQIRV 330
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Frame = +1
Query: 211 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 375
+++VG L + L + F+ G + V V + GF F+ E E A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 376 MNGTEMLGATLKV 414
NG E G L+V
Sbjct: 160 FNGYEFEGRPLRV 172
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 42.7 bits (96), Expect = 3e-04
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Frame = +1
Query: 190 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEA 357
TM G + VYVGGL I +E + R F YG + +V + ++ + F+ F N + A
Sbjct: 2 TMDDGNS-VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60
Query: 358 EDACSAMNGTEMLGATLKV 414
+DA M+G + G ++V
Sbjct: 61 DDAIEDMDGKSIGGRAVRV 79
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +1
Query: 211 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSA 375
+VYVG L + + KE LE F + GK+ S V+ P GF F+ F + ++ E A A
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 376 MNGTEMLGATLKV 414
+N + + G ++V
Sbjct: 238 LNNSLLEGQKIRV 250
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Frame = +1
Query: 196 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAE 360
S RVY+G + + E L + +++G + V V + F F +++++A
Sbjct: 72 SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDAN 131
Query: 361 DACSAMNGTEMLGATLKVEIS 423
+NG + G +KV I+
Sbjct: 132 AVVEKLNGNTVEGREIKVNIT 152
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +1
Query: 196 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 360
+ G RVYVG L G+ LE F + GK+ V + GF F+ +++ QE +
Sbjct: 200 AGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259
Query: 361 DACSAMNGTEMLGATLKV 414
+A +++G ++ G ++V
Sbjct: 260 NAIKSLDGADLDGRQIRV 277
Score = 33.5 bits (73), Expect = 0.20
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = +1
Query: 199 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAED 363
S +++VG L + L + F+ G + V V + GF F+ ++ E E
Sbjct: 88 SADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEA 147
Query: 364 ACSAMNGTEMLGATLKV 414
A NG E+ G L+V
Sbjct: 148 AAQQFNGYELDGRPLRV 164
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 42.7 bits (96), Expect = 3e-04
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Frame = +1
Query: 196 SSGG-TRVYVGGLVEGIKKEDLEREFDKYGKL---NSVW--VALNPPGFAFIEFENLQEA 357
SSG T++YV GL ++ L F+++G L N V VA P GFAF+ +E +EA
Sbjct: 72 SSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEA 131
Query: 358 EDACSAMNGTEMLGATLKVE 417
A M+G + G + VE
Sbjct: 132 MKAIQGMHGKFLDGRVIFVE 151
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 42.3 bits (95), Expect = 4e-04
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 375
T VYV L E ++L+ F +YG ++S V + G F F+ FEN ++A A A
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEA 284
Query: 376 MNG 384
+NG
Sbjct: 285 LNG 287
Score = 33.5 bits (73), Expect = 0.20
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Frame = +1
Query: 205 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDACS 372
G +YV L + + E L F ++G + S V +P G + F+ F EA +
Sbjct: 327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLN 386
Query: 373 AMNGTEMLGATLKVEIS 423
MNG + G L V ++
Sbjct: 387 EMNGKMVGGKPLYVALA 403
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 41.9 bits (94), Expect = 6e-04
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +1
Query: 193 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 357
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 358 EDACSAMNGTEMLGATLKV 414
DA MNG E+ G + V
Sbjct: 61 RDAIEEMNGKELDGRVITV 79
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 41.9 bits (94), Expect = 6e-04
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +1
Query: 193 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 357
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 358 EDACSAMNGTEMLGATLKV 414
DA MNG E+ G + V
Sbjct: 61 RDAIEEMNGKELDGRVITV 79
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 41.9 bits (94), Expect = 6e-04
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +1
Query: 193 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 357
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 358 EDACSAMNGTEMLGATLKV 414
DA MNG E+ G + V
Sbjct: 61 RDAIEEMNGKELDGRVITV 79
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 41.9 bits (94), Expect = 6e-04
Identities = 20/61 (32%), Positives = 36/61 (59%)
Frame = +1
Query: 235 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 414
+ + DLE+ F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 66 DNTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDASNNSKLMDKVISV 122
Query: 415 E 417
E
Sbjct: 123 E 123
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 41.9 bits (94), Expect = 6e-04
Identities = 20/61 (32%), Positives = 36/61 (59%)
Frame = +1
Query: 235 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 414
+ + DLE+ F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 107 DNTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDASNNSKLMDKVISV 163
Query: 415 E 417
E
Sbjct: 164 E 164
Score = 41.5 bits (93), Expect = 7e-04
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 393
V+ G ++ DLER F KYGK+ V + GFAF+ E+ ++AEDA A++ E
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDM---KAGFAFVYMEDERDAEDAIRALDRFEF 60
Query: 394 --LGATLKVE 417
G L+VE
Sbjct: 61 GRKGRRLRVE 70
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 41.5 bits (93), Expect = 7e-04
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 372
+++++GG+ + ++ L F KYG++ V L+ GF F+ F + + A A
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 373 AMNGTEMLGATLKV 414
A++G ++ G +KV
Sbjct: 100 ALDGRDLHGRVVKV 113
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 41.5 bits (93), Expect = 7e-04
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = +1
Query: 196 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV-WVALNPPGFAFIEF--ENLQEAEDA 366
S GG R++VGGL E + ++DL + F G +++V +V FA+I+F +
Sbjct: 6 SGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKL 65
Query: 367 CSAMNGTEMLGATLKVE 417
S NG G L++E
Sbjct: 66 FSTYNGCVWKGGRLRLE 82
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 41.5 bits (93), Expect = 7e-04
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Frame = +1
Query: 193 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEA 357
+ + T +Y+G + G + ++E F ++G + V VA N F FI+FE+ + A
Sbjct: 55 LQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVA 114
Query: 358 EDACSAMNGTEMLGATLKVEI 420
E A AMN ++ LKV +
Sbjct: 115 EIAAGAMNDYLLMEHMLKVHV 135
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/69 (27%), Positives = 41/69 (59%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 387
T ++VG + + + ++DL+ F ++G+L V + F+++ N AE A S +NGT
Sbjct: 278 TTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAG-KRCGFVQYANRACAEQALSVLNGT 336
Query: 388 EMLGATLKV 414
++ G ++++
Sbjct: 337 QLGGQSIRL 345
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 41.1 bits (92), Expect = 0.001
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Frame = +1
Query: 211 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 375
++YVG L + + L + F+ +G + V + L+P GF FI+F L+ ++ A A
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 376 MNG-TEMLGATLKV 414
+NG E+ G T+KV
Sbjct: 326 LNGKLEIAGRTIKV 339
Score = 37.1 bits (82), Expect = 0.016
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +1
Query: 247 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 381
++D+ E KYG +N ++V N GF ++ F++++ A A AM+
Sbjct: 458 RDDVADECSKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAMH 502
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 41.1 bits (92), Expect = 0.001
Identities = 23/73 (31%), Positives = 39/73 (53%)
Frame = +1
Query: 196 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 375
SS G ++V L I E+L F YG++ V ++ +IEF ++++A+ A
Sbjct: 292 SSEGA-LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKVALQG 350
Query: 376 MNGTEMLGATLKV 414
+NG E+ G LK+
Sbjct: 351 LNGLEVAGRQLKL 363
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 378
++V + G K+ L R F+K+G++ ++ +P G A+IEF + AE+A S +
Sbjct: 518 IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS-L 576
Query: 379 NGTEMLGATLKV 414
+GT + LK+
Sbjct: 577 DGTSFMSRILKI 588
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Frame = +1
Query: 196 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAE 360
+S +++++GGL + ++ L+ F +G++ V +A + GF F++F +A
Sbjct: 37 ASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDAL 96
Query: 361 DACSAMNGTEMLGATLKVEIS 423
A AM+G +LG L++ +
Sbjct: 97 SAKDAMDGKGLLGRPLRISFA 117
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +1
Query: 211 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 375
R+YVG L + LER F ++GK+ V + GF F++ N E A +A
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 376 MNGTEMLGATLKVEIS 423
++G + G +KV ++
Sbjct: 268 LDGQNLEGRAIKVNVA 283
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +1
Query: 211 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 375
+++VG L + + L F++ G + V N GF F+ ++EAE A
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 376 MNGTEMLGATLKV 414
N E+ G L V
Sbjct: 174 FNSFEVNGRRLTV 186
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 387
VYVG + DLER F K+G++ V + G+AF+ FE+ ++AEDA + T
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDM---KSGYAFVYFEDERDAEDAIRRTDNT 58
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/58 (31%), Positives = 35/58 (60%)
Frame = +1
Query: 244 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 417
++ D+ER F+ YGK+ +V + N FAF++F ++A A + + +++L + VE
Sbjct: 108 RERDMERHFEPYGKVLNVRMRRN---FAFVQFATQEDATKALDSTHNSKLLDKVVSVE 162
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +1
Query: 205 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACS 372
G+ +Y+ L + + E L+ F +YG + S V +N G F F+ + N +EA A
Sbjct: 327 GSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMK 386
Query: 373 AMNGTEMLG 399
MNG +M+G
Sbjct: 387 EMNG-KMIG 394
Score = 37.9 bits (84), Expect = 0.009
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 375
T VYV L + I ++L++ F KYG ++S V + G F F+ F + + A A
Sbjct: 225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEK 284
Query: 376 MNGTEM 393
MNG +
Sbjct: 285 MNGISL 290
Score = 33.5 bits (73), Expect = 0.20
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +1
Query: 190 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEA 357
T SG V++ L I + L F +G + S VA++ G+ F++FE + A
Sbjct: 126 TRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETA 185
Query: 358 EDACSAMNG 384
+ A +NG
Sbjct: 186 QAAIDKLNG 194
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 375
T VYV L E + E+L + F ++G S + + GF F+ FEN +A A A
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDA 283
Query: 376 MNG 384
+NG
Sbjct: 284 LNG 286
Score = 37.5 bits (83), Expect = 0.012
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Frame = +1
Query: 199 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDA 366
S G+ +YV L E + + L F +G + S V +P G + F+ F +EA A
Sbjct: 324 SQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRA 383
Query: 367 CSAMNGTEMLGATLKVEIS 423
+ MNG ++ L V ++
Sbjct: 384 ITEMNGKMIVTKPLYVALA 402
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 375
T VYV LVE DL+R F ++G++ S V + G F F+ FE + A A
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEK 178
Query: 376 MNG 384
MNG
Sbjct: 179 MNG 181
Score = 36.3 bits (80), Expect = 0.028
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +1
Query: 205 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDACS 372
G +YV L + + LE F ++G + S V ++ G + F+EF +EA A
Sbjct: 222 GMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAML 281
Query: 373 AMNGTEMLG 399
MNG +M+G
Sbjct: 282 KMNG-KMVG 289
Score = 31.9 bits (69), Expect = 0.60
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +1
Query: 199 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDA 366
SG V+V L E I + L F +GK+ S VA + G + F++F + A
Sbjct: 28 SGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTA 87
Query: 367 CSAMNGT 387
C+ NGT
Sbjct: 88 CNFHNGT 94
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +1
Query: 205 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 369
G +YV GL + + DLE F K GK+ V + L+P GF FI +++ +A
Sbjct: 44 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 103
Query: 370 SAMNGTEMLGATLKVE 417
+++ + + G + VE
Sbjct: 104 RSLDHSVLQGRVITVE 119
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +1
Query: 205 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 369
G +YV GL + + DLE F K GK+ V + L+P GF FI +++ +A
Sbjct: 74 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 133
Query: 370 SAMNGTEMLGATLKVE 417
+++ + + G + VE
Sbjct: 134 RSLDHSVLQGRVITVE 149
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 372
T + V L ++EDL R F+++G + +++ + P GF FI+F + +A +A
Sbjct: 37 TSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKH 96
Query: 373 AMNGTEMLGATLKV 414
M+G +LG L V
Sbjct: 97 QMDGYLLLGRELTV 110
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 372
T + V L ++EDL + F+++G + +++ + P GF F++F + +A DA
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKH 95
Query: 373 AMNGTEMLGATLKV 414
M+G +LG L V
Sbjct: 96 HMDGYLLLGRELTV 109
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMN 381
VYVG + E+++ F G +N V + ++ P GFA++EF ++ ++A +N
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LN 149
Query: 382 GTEMLGATLKV 414
+E+ G LKV
Sbjct: 150 ESELHGRQLKV 160
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMN 381
VYVG + E+++ F G +N V + ++ P GFA++EF ++ ++A +N
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LN 149
Query: 382 GTEMLGATLKV 414
+E+ G LKV
Sbjct: 150 ESELHGRQLKV 160
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +1
Query: 211 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 375
RVYVG L + LE+ F ++GK+ V + GF F+ ++ E +A SA
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 376 MNGTEMLGATLKVEIS 423
++G + G ++V ++
Sbjct: 305 LDGQNLEGRAIRVNVA 320
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +1
Query: 211 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 375
+++VG L + + L F++ G + V N GF F+ ++ EAE A
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 376 MNGTEMLGATLKV 414
N ++ G L V
Sbjct: 211 FNRYDLNGRLLTV 223
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAM 378
VYVGG+ + + DL F +YG++ V + + GFAF+ +E+ + A +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 379 NGTEMLGATLKVE 417
NG +LG T+KV+
Sbjct: 98 NGALVLGRTIKVD 110
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/69 (28%), Positives = 37/69 (53%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 387
T V+VGGL + + L+ F +YG++ V + F++F AE+A +NG
Sbjct: 261 TTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAG-KRCGFVQFSEKSCAEEALRMLNGV 319
Query: 388 EMLGATLKV 414
++ G T+++
Sbjct: 320 QLGGTTVRL 328
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +1
Query: 205 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDAC 369
G+R++VGGL + DLER F ++G + + L GF FI F + + +++
Sbjct: 6 GSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESI 65
Query: 370 SAMNGTE 390
M+G +
Sbjct: 66 REMHGRD 72
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 372
TRVYVG L + L F YG + V + GF F+ + + EAE A S
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 373 AMNGTEMLGATLKVEI 420
M+G E+ G + V++
Sbjct: 63 GMDGKELNGRRVSVKL 78
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/61 (29%), Positives = 36/61 (59%)
Frame = +1
Query: 241 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 420
+ ++L + F YG++ + N FIE+ ++++AE A A+N +E+ G +K+E+
Sbjct: 281 VSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 340
Query: 421 S 423
S
Sbjct: 341 S 341
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/61 (29%), Positives = 36/61 (59%)
Frame = +1
Query: 241 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 420
+ ++L + F YG++ + N FIE+ ++++AE A A+N +E+ G +K+E+
Sbjct: 294 VSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 353
Query: 421 S 423
S
Sbjct: 354 S 354
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 38.7 bits (86), Expect = 0.005
Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSA 375
T +Y+ L + ++ L +F ++GK+ S+ +A + G+AF+ F+N ++A A
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAET 260
Query: 376 MNGTE 390
+NGT+
Sbjct: 261 VNGTK 265
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/58 (31%), Positives = 35/58 (60%)
Frame = +1
Query: 244 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 417
++ D+ER F+ YGK+ +V + N FAF++F ++A A + + +++L + VE
Sbjct: 82 RERDMERHFEPYGKVLNVRMRRN---FAFVQFATQEDATKALDSTHNSKLLDKVVSVE 136
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 37.9 bits (84), Expect = 0.009
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 372
++++VGGL E L+ F +GK+ V L+ GF F+ +++++ A +A
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 373 AMNGTEMLGATLKV 414
AM E+ G + V
Sbjct: 96 AMQNKELDGRIIGV 109
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 37.5 bits (83), Expect = 0.012
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Frame = +1
Query: 193 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 357
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 358 EDACSAMNGT 387
DA MNG+
Sbjct: 61 RDAIEEMNGS 70
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 37.5 bits (83), Expect = 0.012
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +1
Query: 202 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 366
G R++VGGL + + + +G L + N G+AF +++L + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 367 CSAMNGTEMLGATLKV 414
C+A+NG +M TL V
Sbjct: 417 CAALNGIKMGDKTLTV 432
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 37.5 bits (83), Expect = 0.012
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +1
Query: 202 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 366
G R++VGGL + + + +G L + N G+AF +++L + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 367 CSAMNGTEMLGATLKV 414
C+A+NG +M TL V
Sbjct: 417 CAALNGIKMGDKTLTV 432
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 37.5 bits (83), Expect = 0.012
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +1
Query: 202 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 366
G R++VGGL + + + +G L + N G+AF +++L + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 367 CSAMNGTEMLGATLKV 414
C+A+NG +M TL V
Sbjct: 417 CAALNGIKMGDKTLTV 432
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 37.5 bits (83), Expect = 0.012
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 372
++++VGGL G L++ F +G++ V + GF F+ F A +A
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 373 AMNGTEMLGATLKVEIS 423
M+G E+ G ++V ++
Sbjct: 95 EMDGKELNGRQIRVNLA 111
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 37.5 bits (83), Expect = 0.012
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 372
++++VGGL G L++ F +G++ V + GF F+ F A +A
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 373 AMNGTEMLGATLKVEIS 423
M+G E+ G ++V ++
Sbjct: 95 EMDGKELNGRQIRVNLA 111
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 37.1 bits (82), Expect = 0.016
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMN 381
+YVG + E++++ F G +N V + + P GFA++EF ++ +++ +N
Sbjct: 105 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSL-ILN 163
Query: 382 GTEMLGATLKV 414
+E+ G +KV
Sbjct: 164 ESELHGRQIKV 174
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 37.1 bits (82), Expect = 0.016
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +1
Query: 205 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDAC 369
G+ V++GGL + +EDL ++ G++ V + + + G+AF+ F+ A+ A
Sbjct: 115 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
Query: 370 SAMNGTEMLGATLKVEIS 423
++ E G T++ +S
Sbjct: 175 EELHSKEFKGKTIRCSLS 192
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 37.1 bits (82), Expect = 0.016
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +1
Query: 199 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDAC 369
+G +YV L I LER F +G + S V GF F++F+ Q A A
Sbjct: 109 TGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSAR 168
Query: 370 SAMNGTEMLGATLKV 414
SA++G+ + G L V
Sbjct: 169 SALHGSMVYGKKLFV 183
Score = 36.3 bits (80), Expect = 0.028
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 375
T VYV L+E + + L F +YG ++SV V + GF F+ F N + A+ A +
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMES 261
Query: 376 MNGTEM 393
+ G ++
Sbjct: 262 LCGLQL 267
Score = 32.7 bits (71), Expect = 0.35
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSA 375
+ +YV L E + + L F YG++ S V + GF F+ F N +E++ A
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRY 363
Query: 376 MNGTEMLGATLKVEIS 423
+NG + G + V ++
Sbjct: 364 LNGFLVDGKPIVVRVA 379
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 37.1 bits (82), Expect = 0.016
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = +1
Query: 205 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 384
GT V V L I +DL F +G++ + + F+EF +++ AE A A+N
Sbjct: 253 GTLV-VFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNR 311
Query: 385 TEMLGATLKVEIS 423
E+ G +KVE S
Sbjct: 312 CEIAGKRIKVEPS 324
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/70 (17%), Positives = 32/70 (45%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 393
++V + ++ +L F++YG + +++ GF I + +++ A A ++ +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 394 LGATLKVEIS 423
L + S
Sbjct: 230 RRRKLDIHFS 239
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 37.1 bits (82), Expect = 0.016
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = +1
Query: 205 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 384
GT V V L I +DL F +G++ + + F+EF +++ AE A A+N
Sbjct: 253 GTLV-VFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNR 311
Query: 385 TEMLGATLKVEIS 423
E+ G +KVE S
Sbjct: 312 CEIAGKRIKVEPS 324
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/70 (17%), Positives = 32/70 (45%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 393
++V + ++ +L F++YG + +++ GF I + +++ A A ++ +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 394 LGATLKVEIS 423
L + S
Sbjct: 230 RRRKLDIHFS 239
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 37.1 bits (82), Expect = 0.016
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 369
T+V+VGGL + E L R FD+YG + V + G+ F+ F + + A AC
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 82
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 37.1 bits (82), Expect = 0.016
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +1
Query: 190 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQE 354
T G +++ + + ++L F +GK+ S V ++ F FI +++
Sbjct: 333 TEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAA 392
Query: 355 AEDACSAMNGTEMLGATLKVEI 420
A++A + MNG ++ G LKV++
Sbjct: 393 AQNAINTMNGCQLSGKKLKVQL 414
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/66 (21%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +1
Query: 211 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAM 378
+++VG L + + + +++ F +YG + + + G F+++E+ ++A A A+
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 169
Query: 379 NGTEML 396
NG ++
Sbjct: 170 NGRHIM 175
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 37.1 bits (82), Expect = 0.016
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +1
Query: 190 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQE 354
T G +++ + + ++L F +GK+ S V ++ F FI +++
Sbjct: 324 TEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAA 383
Query: 355 AEDACSAMNGTEMLGATLKVEI 420
A++A + MNG ++ G LKV++
Sbjct: 384 AQNAINTMNGCQLSGKKLKVQL 405
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/66 (21%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +1
Query: 211 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAM 378
+++VG L + + + +++ F +YG + + + G F+++E+ ++A A A+
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 160
Query: 379 NGTEML 396
NG ++
Sbjct: 161 NGRHIM 166
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 36.7 bits (81), Expect = 0.021
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 372
T++YVGGL +KE L F ++G++ V V + G+ F+ F++ + A AC
Sbjct: 13 TKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACK 72
Query: 373 AMNGT 387
N T
Sbjct: 73 DPNPT 77
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 36.7 bits (81), Expect = 0.021
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 372
+++++GGL ++ L F K G++ + ++ GF F+ F + EA+ A
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 373 AMNGTEMLGATLKVE 417
NG ++ G T+ V+
Sbjct: 94 EFNGQQLNGRTIFVD 108
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 36.7 bits (81), Expect = 0.021
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = +1
Query: 244 KKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGATL 408
+ E+L F+++G + V++ + P GFAF+EF + +A +A +MN G +
Sbjct: 59 RPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREI 118
Query: 409 KVEIS 423
V ++
Sbjct: 119 TVVVA 123
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 36.3 bits (80), Expect = 0.028
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMN 381
V+VG + E++++ F G ++ V + + P GFA++EF ++ ++A +N
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQ-LN 152
Query: 382 GTEMLGATLKV 414
+E+ G LKV
Sbjct: 153 ESELHGRQLKV 163
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 36.3 bits (80), Expect = 0.028
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAM 378
++VG L +G +EDL++ F G++ V + NP G AF+ F +++A+ A +
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKEL 275
Query: 379 NGTEMLGATLKVEIS 423
+ G V S
Sbjct: 276 KSPMINGKKCGVTAS 290
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.9 bits (79), Expect = 0.037
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +1
Query: 211 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 375
+++VGGL I +E+ + FD++G + V V + P GF FI F++ +A D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-DDAVDRVLH 169
Query: 376 MNGTEMLGATLKVE 417
E+ G ++V+
Sbjct: 170 KTFHELNGKLVEVK 183
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.9 bits (79), Expect = 0.037
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +1
Query: 211 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 375
+++VGGL I +E+ + FD++G + V V + P GF FI F++ +A D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-DDAVDRVLH 169
Query: 376 MNGTEMLGATLKVE 417
E+ G ++V+
Sbjct: 170 KTFHELNGKLVEVK 183
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 35.9 bits (79), Expect = 0.037
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +1
Query: 211 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 375
+++VGGL I +E+ + FD++G + V V + P GF FI F++ +A D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-DDAVDRVLH 169
Query: 376 MNGTEMLGATLKVE 417
E+ G ++V+
Sbjct: 170 KTFHELNGKLVEVK 183
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 35.9 bits (79), Expect = 0.037
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +1
Query: 211 RVYVGGLVEGIKKEDLEREF-DKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSA 375
+VY G L + + L+ F D+ G L + + GF FI FE+ + + A +
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 376 MNGTEMLGATLKVEIS 423
MNG E+ G L++ ++
Sbjct: 280 MNGVEVEGRALRLNLA 295
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 35.9 bits (79), Expect = 0.037
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +1
Query: 211 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 375
R +VGGL ++ +ER F+++G++ + ++ GF F+ F++ A
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDR 104
Query: 376 MNGTEMLGATLKVE 417
MNG E+ G + +
Sbjct: 105 MNGQELDGRNITAQ 118
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 35.9 bits (79), Expect = 0.037
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAM 378
+YVGGL + + + L F +G + V L+ F F+ F ++A A M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 379 NGTEMLGATLKV 414
+G E+ G L V
Sbjct: 75 DGAELYGRVLTV 86
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 35.5 bits (78), Expect = 0.049
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 372
T VY+G + +E L F + G++ + + L+ P GF F+ F + ++ EDA
Sbjct: 34 TTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVK 93
Query: 373 AMNGTEMLGATLKVE 417
++GT + ++V+
Sbjct: 94 YISGTILDDRPIRVD 108
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 35.5 bits (78), Expect = 0.049
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 378
+++G L + + L F + G+L SV V N P G+ FIEF + AE
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 379 NGTEMLGATLKVEIS 423
NGT+M G L ++
Sbjct: 86 NGTQMPGTELTFRLN 100
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 35.5 bits (78), Expect = 0.049
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Frame = +1
Query: 193 MSSGGT--RVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQ 351
M+SG R +VGGL LE F +YG K+ + GF F+ F++ +
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 352 EAEDACSAMNGTEMLGATLKV 414
+DA MNG ++ G ++ V
Sbjct: 61 AMKDAIEGMNGQDLDGRSITV 81
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 35.5 bits (78), Expect = 0.049
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Frame = +1
Query: 193 MSSGGT--RVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQ 351
M+SG R +VGGL LE F +YG K+ + GF F+ F++ +
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 352 EAEDACSAMNGTEMLGATLKV 414
+DA MNG ++ G ++ V
Sbjct: 61 AMKDAIEGMNGQDLDGRSITV 81
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 35.5 bits (78), Expect = 0.049
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGK-LNSVWVA----LNPPGFAFIEFENLQEAEDACS 372
T+V+VGGL + E L + F++YG+ L +V +A G+ F+ F + + A AC+
Sbjct: 24 TKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACA 83
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 35.1 bits (77), Expect = 0.065
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 378
V V L E ++ DL F +G + V+VA++ GF F+ F + ++A+ A + +
Sbjct: 215 VRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKL 274
Query: 379 NGTEMLGATLKVE 417
NG L+VE
Sbjct: 275 NGYGYDNLILRVE 287
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 35.1 bits (77), Expect = 0.065
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 372
++++VGG+ + L F KYG++ + ++ GFAF+ F + +EA +A
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 373 AMNGTEMLGATLKV 414
++G ++ G ++V
Sbjct: 94 -LDGQDLHGRRIRV 106
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 34.7 bits (76), Expect = 0.086
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 387
T V GL + L + F + +L P GF FI FE+ +A+ A A+NG
Sbjct: 71 TCVSNSGLSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGK 130
Query: 388 EMLGATLKVE 417
+ G + VE
Sbjct: 131 IVNGRLIFVE 140
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 34.7 bits (76), Expect = 0.086
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Frame = +1
Query: 196 SSGGTR---VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQ 351
+ GG R ++VGGL I + + + FD++G + V V + P GF FI F++ +
Sbjct: 115 NGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-E 173
Query: 352 EAEDACSAMNGTEMLGATLKVE 417
E+ D E+ G ++V+
Sbjct: 174 ESVDMVLHKTFHELNGKMVEVK 195
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 34.7 bits (76), Expect = 0.086
Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Frame = +1
Query: 211 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAM 378
+++VG L + + + +++ F KYG + + + G AF+++E ++A A ++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 379 NGT-EMLGATLKVEI 420
NG +M G+T+ + +
Sbjct: 167 NGKHKMEGSTVPLVV 181
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 34.7 bits (76), Expect = 0.086
Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Frame = +1
Query: 211 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAM 378
+++VG L + + + +++ F KYG + + + G AF+++E ++A A ++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 379 NGT-EMLGATLKVEI 420
NG +M G+T+ + +
Sbjct: 167 NGKHKMEGSTVPLVV 181
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Frame = +1
Query: 205 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDAC 369
G +++ + ++L F +G + S V ++ F F+ +++ A++A
Sbjct: 348 GANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAI 407
Query: 370 SAMNGTEMLGATLKVEI 420
MNG + G LKV++
Sbjct: 408 DMMNGRHLGGKKLKVQL 424
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 34.7 bits (76), Expect = 0.086
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Frame = +1
Query: 199 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAED 363
S + ++V G+ +E L + F +YG++ V V ++ P GFA++ F + +EAE
Sbjct: 18 SFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEK 77
Query: 364 ACSAMN 381
A +N
Sbjct: 78 ALLELN 83
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 34.7 bits (76), Expect = 0.086
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +1
Query: 202 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 366
G R++VGGL + + + +G L + N G+AF +++ + A
Sbjct: 373 GPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIA 432
Query: 367 CSAMNGTEMLGATLKV 414
C+A+NG +M TL V
Sbjct: 433 CAALNGIKMGDKTLTV 448
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 34.3 bits (75), Expect = 0.11
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +1
Query: 205 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 372
GT++Y+ L G+ ED++ F + G L + + G A + F +A A
Sbjct: 107 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVK 166
Query: 373 AMNGTEMLGATLKVEI 420
N ++ G +K+EI
Sbjct: 167 RYNNVQLDGKLMKIEI 182
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 33.9 bits (74), Expect = 0.15
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +1
Query: 220 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 399
V L I ++L R YG++ + ++ +IEF +++ A A +NG E+ G
Sbjct: 306 VNNLDSSISNQELNRLVKSYGEVKEIRRTMHDNSQIYIEFFDVRAAAAALGGLNGLEVAG 365
Query: 400 ATLKV 414
L++
Sbjct: 366 KKLQL 370
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 33.9 bits (74), Expect = 0.15
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSA 375
T+++V + K +L + F +G++ S+ + G+AF+EF QEA +A A
Sbjct: 669 TKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKA 728
Query: 376 MNGTEMLGATLKVE 417
+ T G L +E
Sbjct: 729 LASTHFYGRHLVLE 742
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 33.9 bits (74), Expect = 0.15
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 372
T++Y G L + L + + V V N GFAF+ N+++
Sbjct: 85 TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIID 144
Query: 373 AMNGTEMLGATLKVEIS 423
++GTE LG LKV +
Sbjct: 145 NLDGTEYLGRALKVNFA 161
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 33.5 bits (73), Expect = 0.20
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 319 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 423
G+ F+ F +EAE+A + +NG E++G + ++ S
Sbjct: 237 GYGFVSFATREEAENAITKLNGKEIMGRPITLKFS 271
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 33.1 bits (72), Expect = 0.26
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +1
Query: 205 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 372
GT++Y+ L G+ ED++ F + G+L V + G A + + +A A
Sbjct: 85 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 144
Query: 373 AMNGTEMLGATLKVEI 420
N ++ G +K+EI
Sbjct: 145 KYNDVQLDGKPMKIEI 160
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 33.1 bits (72), Expect = 0.26
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +1
Query: 205 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 372
GT++Y+ L G+ ED++ F + G+L V + G A + + +A A
Sbjct: 21 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 80
Query: 373 AMNGTEMLGATLKVEI 420
N ++ G +K+EI
Sbjct: 81 KYNDVQLDGKPMKIEI 96
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 33.1 bits (72), Expect = 0.26
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +1
Query: 205 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 372
GT++Y+ L G+ ED++ F + G+L V + G A + + +A A
Sbjct: 87 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 146
Query: 373 AMNGTEMLGATLKVEI 420
N ++ G +K+EI
Sbjct: 147 KYNDVQLDGKPMKIEI 162
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 33.1 bits (72), Expect = 0.26
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +1
Query: 211 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALN-PPGFAFIEFENLQEAEDACSA 375
+++VGGL + E+ + F+ YG + V + A N P GF F+ F++ ++A D+
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS-EDAVDSVLH 169
Query: 376 MNGTEMLGATLKVE 417
++ G ++V+
Sbjct: 170 KTFHDLSGKQVEVK 183
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 33.1 bits (72), Expect = 0.26
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 372
T++++GGL G L F +G + V ++ GF F+ F + A A S
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 373 AMNGTEMLGATLKV 414
M+G E+ G ++V
Sbjct: 95 EMDGKELNGRHIRV 108
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 33.1 bits (72), Expect = 0.26
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 372
T++++GGL G L F +G + V ++ GF F+ F + A A S
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 373 AMNGTEMLGATLKV 414
M+G E+ G ++V
Sbjct: 95 EMDGKELNGRHIRV 108
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 33.1 bits (72), Expect = 0.26
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 393
+YVGGL I ++D+ +F +G++ S+ + L AF+ + + + AE A ++ +
Sbjct: 230 LYVGGLNSRILEQDIRDQFYAHGEIESIRI-LADKACAFVTYTSREGAEKAAQELSNRLV 288
Query: 394 L-GATLKV 414
+ G LK+
Sbjct: 289 INGQRLKL 296
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 32.7 bits (71), Expect = 0.35
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +1
Query: 250 EDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 417
ED+ F+KYG + + ++++ G FIE + +EA A ++ E G LKV+
Sbjct: 108 EDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVD 167
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 32.7 bits (71), Expect = 0.35
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 378
++V L + ++REF+ YG + V + + P G+AFIE+ + ++ + A
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 379 NGTEMLGATLKVEI 420
+G ++ G + V++
Sbjct: 200 DGQKIDGRRVLVDV 213
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 32.7 bits (71), Expect = 0.35
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = +1
Query: 220 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 399
V L + E L + F G + + + A+IE+ N +EA A A+N TE+ G
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSIT-DSKHIAYIEYSNSEEAT-AALALNNTEVFG 412
Query: 400 ATLKVEIS 423
L VEI+
Sbjct: 413 RALNVEIA 420
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 32.7 bits (71), Expect = 0.35
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +1
Query: 211 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSAM 378
++YV L + K ++ F +YG + +++AL+ G+AF++F + A A A+
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKAL 267
Query: 379 NG 384
NG
Sbjct: 268 NG 269
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 32.3 bits (70), Expect = 0.46
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +1
Query: 205 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 372
GTR++V L +G+ ED+ F + G++ + + P G A + + +A A
Sbjct: 92 GTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALK 151
Query: 373 AMNGTEMLGATLKVEI 420
N + G +++EI
Sbjct: 152 KYNNVLLDGRPMRLEI 167
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 32.3 bits (70), Expect = 0.46
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +1
Query: 247 KEDLEREFDKYGKLNSVWVALN-PPGFAFIEFENLQEAEDACSAMNG 384
+ED++ E K+G +SV V + P G + F++ ++A+ AMNG
Sbjct: 430 EEDVKEESLKHGPFDSVKVCEHHPQGVVLVRFKDRRDAQKCIEAMNG 476
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 32.3 bits (70), Expect = 0.46
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDACS 372
TR++V + + + D F++YG++ +++ + G FI F + ED
Sbjct: 91 TRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVED--- 147
Query: 373 AMNGTEMLGAT 405
M T LG T
Sbjct: 148 LMEDTHDLGGT 158
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +1
Query: 205 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEF 339
G +++VG L + +DL F ++G + ++ +P GF F+ F
Sbjct: 239 GNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTF 288
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 32.3 bits (70), Expect = 0.46
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGK-LNSVWVA----LNPPGFAFIEFENLQEAEDAC 369
T+V+VGGL KE + F KYG L +V ++ G+ F+ F++ + A AC
Sbjct: 17 TKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRAC 75
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 32.3 bits (70), Expect = 0.46
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 378
+++ L + KE++++ F +G++ S+ + L+ P G AF++F+ + A SA
Sbjct: 563 LFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAA 622
Query: 379 NGTEMLGATLK 411
+ +G LK
Sbjct: 623 DTASGVGVLLK 633
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 378
V V GL I LE F + G + ++ N GFAF++F ++ A
Sbjct: 22 VCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELK 81
Query: 379 NGTEMLGATLKVE 417
NG+ + G + V+
Sbjct: 82 NGSTVGGRRITVK 94
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 32.3 bits (70), Expect = 0.46
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +1
Query: 205 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 372
GT VY+ L +G+ ED+ + + G+L + + P G A + + +A A
Sbjct: 106 GTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMR 165
Query: 373 AMNGTEMLGATLKVEI 420
N + G +K+EI
Sbjct: 166 KYNNVLLDGRPMKLEI 181
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 31.9 bits (69), Expect = 0.60
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 372
T++YV GL + E L F+++G++ V + GF F+ F ++ A AC
Sbjct: 9 TKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACE 68
Query: 373 AMNGT 387
N T
Sbjct: 69 NPNHT 73
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 31.9 bits (69), Expect = 0.60
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN--PPGFAFIEFENLQEAEDACSAMNG 384
+YV L I E++ F KYG + + + + G AF+ +E++ +A++A ++G
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSG 79
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 31.9 bits (69), Expect = 0.60
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM-NGTE 390
+YVGGL + ++D+ +F +G++ S+ + L AF+ + + AE A + N
Sbjct: 230 LYVGGLNSRVLEQDIRDQFYAHGEIESIRI-LAEKACAFVTYTTREGAEKAAEELSNRLV 288
Query: 391 MLGATLKV 414
+ G LK+
Sbjct: 289 VNGQRLKL 296
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 31.9 bits (69), Expect = 0.60
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +1
Query: 211 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFEN 345
+++VGG+ + +E L++ F +YG + VA P GF F+ F N
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAN 56
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 31.5 bits (68), Expect = 0.80
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 378
++V L + + L+ F +G++ V +A++ P G ++EF+ +AE A M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 379 NGTEMLGATLK 411
+G ++ G +K
Sbjct: 160 DGAQIDGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 31.5 bits (68), Expect = 0.80
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 378
++V L + + L+ F +G++ V +A++ P G ++EF+ +AE A M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 379 NGTEMLGATLK 411
+G ++ G +K
Sbjct: 160 DGAQIDGKVVK 170
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG------FAFIEFENLQEAEDACSA 375
VYV L I ++E EF +G + V L +AF+EFE++ E+A A
Sbjct: 259 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 318
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG------FAFIEFENLQEAEDACSA 375
VYV L I ++E EF +G + V L +AF+EFE++ E+A A
Sbjct: 318 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 377
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG---FAFIEFENLQEAEDACSAMNG 384
VYV + + + +E+L F G++ V +P FAFIEF N +E A +M+G
Sbjct: 171 VYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLRFAFIEFTN-EEGARAALSMSG 229
Query: 385 TEMLGATLKV 414
T + LKV
Sbjct: 230 TVLGFYPLKV 239
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +1
Query: 211 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 345
+++VGGL + ++ F+ YG ++ + ++ P GF F+ F++
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDS 160
>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 228
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENLQEAEDACS 372
+Y+ + E IKKE+L+R F ++G+L V VAL P G A++ F + A +A
Sbjct: 12 IYIKHINEKIKKEELKRSLYCLFSQFGRLLDV-VALKTPKLRGQAWVVFTEVTAASNAVR 70
Query: 373 AMNGTEMLGATLKVE 417
M ++++
Sbjct: 71 QMQNFPFYDKPMRIQ 85
>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 229
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENLQEAEDACS 372
+Y+ + E IKKE+L+R F ++G+L V VAL P G A++ F + A +A
Sbjct: 12 IYIKHINEKIKKEELKRSLYCLFSQFGRLLDV-VALKTPKLRGQAWVVFTEVTAASNAVR 70
Query: 373 AMNGTEMLGATLKVE 417
M ++++
Sbjct: 71 QMQNFPFYDKPMRIQ 85
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +1
Query: 211 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSA 375
+VYVG L + + L F K+G + S V + FAF+ F + +E DA +
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE-RDAALS 271
Query: 376 MNGTEMLGATLKV 414
NGT+ G + V
Sbjct: 272 FNGTQYEGRRIIV 284
>At5g21030.1 68418.m02501 PAZ domain-containing protein / piwi
domain-containing protein similar to SP|O04379 Argonaute
protein (AGO1) {Arabidopsis thaliana}, SP|Q9XGW1 PINHEAD
protein (ZWILLE protein) {Arabidopsis thaliana};
contains Pfam profiles PF02171: Piwi domain, PF02170:
PAZ domain
Length = 850
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 777 LDSVISLQNHRNIFQEQSSEIXNILPSTLMDSXI 878
LD ++ + +H FQ +S N+LP T++DS I
Sbjct: 702 LDQMMQINHHTKFFQTESPN--NVLPGTIIDSNI 733
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 378
V V L E + DL F +G + VA++ GF F+ F + ++A+ A + +
Sbjct: 176 VRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKL 235
Query: 379 NGTEMLGATLKVEIS 423
NG L+VE S
Sbjct: 236 NGYGYDNLILRVEWS 250
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Frame = +1
Query: 241 IKKEDLEREFDKYGKLNSVWVALNP------PGFAFIEFENLQEAED 363
+K+ED+E F +YGK+NSV + + G A +EF ++A++
Sbjct: 127 VKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQN 173
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +1
Query: 211 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSA 375
++++ GL ++ L F+ +G+L V + ++ G+AF+E+ + A A
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 376 MNGTEMLGATLKVEIS 423
MNG + G + V+++
Sbjct: 343 MNGKIINGWMIVVDVA 358
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +1
Query: 196 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAE 360
+S ++VG L + L + F + + V + GF F+ F N Q+A+
Sbjct: 140 TSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 199
Query: 361 DACSAMNG 384
A + MNG
Sbjct: 200 TAINEMNG 207
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 205 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP--GFAFIEFENLQEAEDACSAM 378
G + V L +GI + + R F +YG ++V AF++F+N A A +
Sbjct: 27 GVTLLVRHLPDGIPHDIVSRLFSQYGA-SAVRPCSGGKLRNAAFVDFKNEAFASQAHRQL 85
Query: 379 NGTEMLGATLKVE 417
NG LG L+V+
Sbjct: 86 NGLRFLGKVLQVQ 98
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 375
T +Y+ L + +E L F +GK+ +A + GFAFIEFE+ A A
Sbjct: 17 TSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLH 76
Query: 376 MNG 384
M+G
Sbjct: 77 MDG 79
>At3g61130.1 68416.m06841 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 673
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 277 YGKLNSVWVALNPPGFAFIEFENLQE 354
+G +N +W LNPPG A I EN+ E
Sbjct: 405 FGAMN-MWFLLNPPGKATIHVENVDE 429
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 29.9 bits (64), Expect = 2.4
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENLQEAEDACS 372
+Y+ L E IKKE+L+R F ++G++ V VAL P G A++ F + A A
Sbjct: 12 IYIQNLNERIKKEELKRSLYCLFSQFGRILDV-VALKTPKLRGQAWVTFSEVTAAGHAVR 70
Query: 373 AM 378
M
Sbjct: 71 QM 72
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 378
VYVGGL + +E L F + G + +V+V + + FIE+ + ++A+ A +
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 379 NGTEMLGATLKV 414
N ++ G ++V
Sbjct: 87 NMIKLHGKPIRV 98
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 372
T+V+VGGL +++ R FD++G++ + + G+ F+ F + A A +
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVA 76
Query: 373 AMN 381
N
Sbjct: 77 DPN 79
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG---FAFIEFENLQEAEDACSAMNG 384
VYV + + + +E L F G++ + +P FAF+EF + Q A +A S + G
Sbjct: 143 VYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALS-LGG 201
Query: 385 TEMLG 399
T MLG
Sbjct: 202 T-MLG 205
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 319 GFAFIEFENLQEAEDACSAMNG 384
GF F+ F N Q+A+ A + MNG
Sbjct: 194 GFGFVSFRNQQDAQTAINEMNG 215
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 319 GFAFIEFENLQEAEDACSAMNG 384
GF F+ F N Q+A+ A + MNG
Sbjct: 190 GFGFVSFRNQQDAQTAINEMNG 211
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 315
V+VG L +KK+ + +EF K+G++ SV + P
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVP 206
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 322 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 423
+AF+EF + ++A+DA ++G + G+ + VE S
Sbjct: 5 YAFVEFSDPRDADDARYYLDGRDFDGSRITVEAS 38
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +1
Query: 211 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 375
+++VGG+ + +++L+ F KYG + V + GF F+ F++ + ++ S
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 376 MNGTEMLGATLKVE 417
N +M ++++
Sbjct: 170 GNMIDMADTQVEIK 183
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 322 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 423
+AF+EF + ++A+DA ++G + G+ + VE S
Sbjct: 5 YAFVEFGDPRDADDARHYLDGRDFDGSRITVEFS 38
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +1
Query: 208 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 372
T ++V GL + E L F ++G++ V + GF F+ + L+++ +
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
Query: 373 AMNGTEMLGATLKVE 417
M+G + G + E
Sbjct: 116 GMDGKFLDGWVIFAE 130
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +1
Query: 256 LEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 420
LE+ FD G++ V+V + AF+ E + AED ++GT+++G T+ V+
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEG-EGAEDKALQLSGTDVVGWTVIVKP 191
Query: 421 S 423
S
Sbjct: 192 S 192
>At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 235 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 375
E +++ + F K+GK+ + + +N AF++F +EAE A A
Sbjct: 448 ESNRRDLILAHFQKFGKVIDIHIPVNSER-AFVQFSKREEAESALRA 493
>At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 235 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 375
E +++ + F K+GK+ + + +N AF++F +EAE A A
Sbjct: 448 ESNRRDLILAHFQKFGKVIDIHIPVNSER-AFVQFSKREEAESALRA 493
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +1
Query: 256 LEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 423
L + F YG + + F+EF ++++A A MNG E+ G + +E S
Sbjct: 229 LRQIFQVYGPIKELRETPYKKHQRFVEFYDVRDAARAFDRMNGKEIGGKQVVIEFS 284
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +1
Query: 235 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 414
+ I ++ L F YG + + + N P A ++ + +AE A + G + G L+V
Sbjct: 255 DSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEV 314
Query: 415 EIS 423
S
Sbjct: 315 NFS 317
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = +1
Query: 283 KLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEM 393
K N +W+ ++P G+ FIEF QEA++A +G ++
Sbjct: 89 KENGLWMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKL 130
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 313 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 423
P GF FI F++ +A A +++G + G + VE++
Sbjct: 47 PKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVA 83
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +1
Query: 193 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV-WVALNPPG--FAFIEFENLQEAED 363
+ ++++GG + I E L +G L + +V+ N AF+E+ +
Sbjct: 35 VEDSSNKIFIGGFSKAISSEMLMEIVSVFGPLKAYRFVSNNDLNQRCAFLEYTDGSVTLK 94
Query: 364 ACSAMNGTEMLGATL 408
AC+ +NG + G+ +
Sbjct: 95 ACAGLNGMRLGGSVI 109
>At1g79880.3 68414.m09332 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 357
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +1
Query: 241 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAED 363
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D
Sbjct: 72 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQD 118
>At1g79880.2 68414.m09331 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 345
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +1
Query: 241 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAED 363
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D
Sbjct: 72 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQD 118
>At1g79880.1 68414.m09333 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 399
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +1
Query: 241 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAED 363
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D
Sbjct: 126 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQD 172
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG---FAFIEFENLQEAEDACSAMNG 384
VYV + + + +E L F G++ + +P FAF+EF + Q A A S + G
Sbjct: 130 VYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALS-LGG 188
Query: 385 TEMLG 399
T M+G
Sbjct: 189 T-MIG 192
>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
to U2 small nuclear ribonucleoprotein auxiliary factor
35 kD subunit related protein 1 (sp|Q15695)
Length = 757
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +1
Query: 250 EDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 417
ED+ EF KYG+L + V N G ++ + +L+ A A ++NG G + E
Sbjct: 309 EDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCE 368
>At1g05510.1 68414.m00563 expressed protein
Length = 241
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 205 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVW 300
G +++ G+ E I+++DLE+ YGK+ W
Sbjct: 121 GGFLFMPGVPEAIQRQDLEKVAKTYGKVYHFW 152
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 214 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV 303
+YVGGL I ++D+ F YG++ S+ V
Sbjct: 227 LYVGGLNSRIFEQDIHDHFYAYGEMESIRV 256
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Frame = +1
Query: 211 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 375
+++VGG+ + +++L+ F KYG + V + GF F+ F++ + ++ S
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 376 MNGTEM 393
N +M
Sbjct: 170 GNMIDM 175
>At1g67550.1 68414.m07696 urease, putative / urea amidohydrolase,
putative similar to SP|P07374 Urease (EC 3.5.1.5) (Urea
amidohydrolase) {Canavalia ensiformis}; contains Pfam
profile PF01979: Amidohydrolase family
Length = 838
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 486 VVVHSEVREEAGSTTHTVAAAAGRTIVT 569
V +H++ E+G HT+ A GRTI T
Sbjct: 514 VNIHTDTLNESGFVEHTINAFRGRTIHT 541
>At1g35420.1 68414.m04394 dienelactone hydrolase family protein low
similarity to dienelactone hydrolase [Rhodococcus
opacus] GI:23094407; contains Pfam profile PF01738:
Dienelactone hydrolase family
Length = 310
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +1
Query: 229 LVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 393
L IKK + + L +++ G +E ++ E E+AC +NGTE+
Sbjct: 37 LASSIKKHITTSFYRRGSSLKNIYALETSDGAINVEVDD-DEEEEACELVNGTEV 90
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,049,556
Number of Sequences: 28952
Number of extensions: 252247
Number of successful extensions: 983
Number of sequences better than 10.0: 182
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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