Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K03
         (885 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1ZYS3 Cluster: Alkylated DNA repair protein; n=1; Micr...    36   1.8  
UniRef50_A3IEM9 Cluster: Putative atp /gtp binding protein; n=1;...    35   3.2  

>UniRef50_A1ZYS3 Cluster: Alkylated DNA repair protein; n=1;
           Microscilla marina ATCC 23134|Rep: Alkylated DNA repair
           protein - Microscilla marina ATCC 23134
          Length = 185

 Score = 35.5 bits (78), Expect = 1.8
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = +3

Query: 75  HITLTHIPTPVWIAQVHF*YLIKQEINSLPXL 170
           H++ TH P P W AQ+   +LIKQ +N+LP L
Sbjct: 60  HVS-THTPLPGWAAQLTHAFLIKQYLNTLPDL 90


>UniRef50_A3IEM9 Cluster: Putative atp /gtp binding protein; n=1;
           Bacillus sp. B14905|Rep: Putative atp /gtp binding
           protein - Bacillus sp. B14905
          Length = 616

 Score = 34.7 bits (76), Expect = 3.2
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +2

Query: 176 RSSHPEAIRSAKMVLAMNKKITGKALCKLLWGHRTNQAFHPDR----KARQVTLVQSY 337
           RS H E  R  + + A +KKI GK L K ++G  T   F  +R      +QV  V  Y
Sbjct: 396 RSMHSEYSREYERLDAQHKKIHGKGLMKAIFGQHTQNEFFKERVQKLNEQQVVCVAQY 453


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 649,121,424
Number of Sequences: 1657284
Number of extensions: 10514500
Number of successful extensions: 18641
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18637
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79522270534
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)